Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
TTC28Q96AY4 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
TTC28Q96AY4 AL356441.2-201ENST00000443009 864 ntBASIC27.14■■□□□ 1.94
TTC28Q96AY4 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC27.14■■□□□ 1.94
TTC28Q96AY4 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
TTC28Q96AY4 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
TTC28Q96AY4 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC27.13■■□□□ 1.93
TTC28Q96AY4 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC27.1■■□□□ 1.93
TTC28Q96AY4 LSM7-203ENST00000585409 512 ntTSL 2 BASIC27.1■■□□□ 1.93
TTC28Q96AY4 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
TTC28Q96AY4 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC27.1■■□□□ 1.93
TTC28Q96AY4 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC27.1■■□□□ 1.93
TTC28Q96AY4 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
TTC28Q96AY4 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
TTC28Q96AY4 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
TTC28Q96AY4 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
TTC28Q96AY4 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC27.09■■□□□ 1.93
TTC28Q96AY4 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC27.09■■□□□ 1.93
TTC28Q96AY4 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC27.08■■□□□ 1.93
TTC28Q96AY4 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
TTC28Q96AY4 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC27.07■■□□□ 1.92
TTC28Q96AY4 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC27.07■■□□□ 1.92
TTC28Q96AY4 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
TTC28Q96AY4 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC27.07■■□□□ 1.92
TTC28Q96AY4 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
TTC28Q96AY4 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC27.06■■□□□ 1.92
TTC28Q96AY4 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
TTC28Q96AY4 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
TTC28Q96AY4 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
TTC28Q96AY4 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC27.06■■□□□ 1.92
TTC28Q96AY4 OR2A1-AS1-204ENST00000470435 602 ntBASIC27.06■■□□□ 1.92
TTC28Q96AY4 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC27.05■■□□□ 1.92
TTC28Q96AY4 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC27.05■■□□□ 1.92
TTC28Q96AY4 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
TTC28Q96AY4 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
TTC28Q96AY4 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
TTC28Q96AY4 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC27.04■■□□□ 1.92
TTC28Q96AY4 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
TTC28Q96AY4 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
TTC28Q96AY4 DUX4L18-201ENST00000553347 1267 ntBASIC27.02■■□□□ 1.92
TTC28Q96AY4 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
TTC28Q96AY4 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC27.01■■□□□ 1.92
TTC28Q96AY4 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
TTC28Q96AY4 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC27■■□□□ 1.91
TTC28Q96AY4 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
TTC28Q96AY4 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
TTC28Q96AY4 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC26.99■■□□□ 1.91
TTC28Q96AY4 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC26.99■■□□□ 1.91
TTC28Q96AY4 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
TTC28Q96AY4 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC26.99■■□□□ 1.91
TTC28Q96AY4 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC26.99■■□□□ 1.91
TTC28Q96AY4 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC26.98■■□□□ 1.91
TTC28Q96AY4 RP9P-202ENST00000450133 1212 ntBASIC26.98■■□□□ 1.91
TTC28Q96AY4 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC26.98■■□□□ 1.91
TTC28Q96AY4 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
TTC28Q96AY4 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC26.97■■□□□ 1.91
TTC28Q96AY4 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC26.96■■□□□ 1.91
TTC28Q96AY4 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC26.96■■□□□ 1.91
TTC28Q96AY4 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
TTC28Q96AY4 AC148477.6-201ENST00000623746 465 ntBASIC26.95■■□□□ 1.91
TTC28Q96AY4 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC26.95■■□□□ 1.9
TTC28Q96AY4 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
TTC28Q96AY4 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
TTC28Q96AY4 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
TTC28Q96AY4 KRT8P33-201ENST00000508125 1423 ntBASIC26.94■■□□□ 1.9
TTC28Q96AY4 LINC00273-201ENST00000539813 1452 ntBASIC26.94■■□□□ 1.9
TTC28Q96AY4 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
TTC28Q96AY4 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
TTC28Q96AY4 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
TTC28Q96AY4 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC26.93■■□□□ 1.9
TTC28Q96AY4 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC26.93■■□□□ 1.9
TTC28Q96AY4 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC26.92■■□□□ 1.9
TTC28Q96AY4 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC26.91■■□□□ 1.9
TTC28Q96AY4 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
TTC28Q96AY4 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC26.91■■□□□ 1.9
TTC28Q96AY4 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC26.9■■□□□ 1.9
TTC28Q96AY4 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC26.89■■□□□ 1.89
TTC28Q96AY4 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
TTC28Q96AY4 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
TTC28Q96AY4 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC26.87■■□□□ 1.89
TTC28Q96AY4 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC26.87■■□□□ 1.89
TTC28Q96AY4 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC26.87■■□□□ 1.89
TTC28Q96AY4 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC26.87■■□□□ 1.89
TTC28Q96AY4 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
TTC28Q96AY4 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC26.87■■□□□ 1.89
TTC28Q96AY4 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC26.85■■□□□ 1.89
TTC28Q96AY4 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC26.84■■□□□ 1.89
TTC28Q96AY4 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC26.84■■□□□ 1.89
TTC28Q96AY4 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC26.83■■□□□ 1.88
TTC28Q96AY4 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC26.82■■□□□ 1.88
TTC28Q96AY4 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC26.82■■□□□ 1.88
TTC28Q96AY4 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
TTC28Q96AY4 ECEL1P2-201ENST00000461596 1295 ntBASIC26.81■■□□□ 1.88
TTC28Q96AY4 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC26.81■■□□□ 1.88
TTC28Q96AY4 MIR638-201ENST00000385237 100 ntBASIC26.81■■□□□ 1.88
TTC28Q96AY4 AC008406.3-201ENST00000620001 1374 ntBASIC26.8■■□□□ 1.88
TTC28Q96AY4 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
TTC28Q96AY4 AC010980.1-201ENST00000587192 1142 ntBASIC26.8■■□□□ 1.88
TTC28Q96AY4 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
TTC28Q96AY4 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms