Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
VPS52Q8N1B4 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
VPS52Q8N1B4 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC27.81■■■□□ 2.04
VPS52Q8N1B4 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
VPS52Q8N1B4 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC27.78■■■□□ 2.04
VPS52Q8N1B4 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC27.77■■■□□ 2.04
VPS52Q8N1B4 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
VPS52Q8N1B4 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
VPS52Q8N1B4 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC27.77■■■□□ 2.04
VPS52Q8N1B4 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC27.77■■■□□ 2.04
VPS52Q8N1B4 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC27.77■■■□□ 2.04
VPS52Q8N1B4 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC27.77■■■□□ 2.04
VPS52Q8N1B4 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC27.76■■■□□ 2.04
VPS52Q8N1B4 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.04
VPS52Q8N1B4 TPT1-202ENST00000379055 948 ntTSL 2 BASIC27.76■■■□□ 2.03
VPS52Q8N1B4 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
VPS52Q8N1B4 RARRES2P2-201ENST00000394842 485 ntBASIC27.75■■■□□ 2.03
VPS52Q8N1B4 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
VPS52Q8N1B4 GPX1-201ENST00000419349 1106 ntBASIC27.74■■■□□ 2.03
VPS52Q8N1B4 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC27.73■■■□□ 2.03
VPS52Q8N1B4 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
VPS52Q8N1B4 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
VPS52Q8N1B4 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
VPS52Q8N1B4 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
VPS52Q8N1B4 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
VPS52Q8N1B4 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
VPS52Q8N1B4 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
VPS52Q8N1B4 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
VPS52Q8N1B4 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC27.72■■■□□ 2.03
VPS52Q8N1B4 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
VPS52Q8N1B4 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
VPS52Q8N1B4 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC27.7■■■□□ 2.03
VPS52Q8N1B4 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC27.7■■■□□ 2.02
VPS52Q8N1B4 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC27.7■■■□□ 2.02
VPS52Q8N1B4 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC27.7■■■□□ 2.02
VPS52Q8N1B4 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC27.69■■■□□ 2.02
VPS52Q8N1B4 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC27.69■■■□□ 2.02
VPS52Q8N1B4 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC27.69■■■□□ 2.02
VPS52Q8N1B4 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC27.69■■■□□ 2.02
VPS52Q8N1B4 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC27.68■■■□□ 2.02
VPS52Q8N1B4 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC27.68■■■□□ 2.02
VPS52Q8N1B4 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC27.67■■■□□ 2.02
VPS52Q8N1B4 AC127502.1-201ENST00000399971 1502 ntBASIC27.67■■■□□ 2.02
VPS52Q8N1B4 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
VPS52Q8N1B4 CEP120-209ENST00000515110 606 ntTSL 3 BASIC27.67■■■□□ 2.02
VPS52Q8N1B4 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
VPS52Q8N1B4 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
VPS52Q8N1B4 RNF126P1-201ENST00000567452 1320 ntBASIC27.65■■■□□ 2.02
VPS52Q8N1B4 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC27.64■■■□□ 2.02
VPS52Q8N1B4 ABHD17AP5-201ENST00000580133 923 ntBASIC27.64■■■□□ 2.02
VPS52Q8N1B4 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
VPS52Q8N1B4 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
VPS52Q8N1B4 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
VPS52Q8N1B4 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC27.61■■■□□ 2.01
VPS52Q8N1B4 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
VPS52Q8N1B4 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC27.61■■■□□ 2.01
VPS52Q8N1B4 AC135983.2-203ENST00000454486 1613 ntBASIC27.6■■■□□ 2.01
VPS52Q8N1B4 WHAMMP2-203ENST00000563942 1603 ntBASIC27.6■■■□□ 2.01
VPS52Q8N1B4 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
VPS52Q8N1B4 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC27.59■■■□□ 2.01
VPS52Q8N1B4 ABCB10P1-201ENST00000614297 2181 ntBASIC27.59■■■□□ 2.01
VPS52Q8N1B4 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
VPS52Q8N1B4 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC27.59■■■□□ 2.01
VPS52Q8N1B4 AC008813.1-201ENST00000536597 885 ntBASIC27.59■■■□□ 2.01
VPS52Q8N1B4 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
VPS52Q8N1B4 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
VPS52Q8N1B4 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC27.58■■■□□ 2.01
VPS52Q8N1B4 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC27.58■■■□□ 2.01
VPS52Q8N1B4 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
VPS52Q8N1B4 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC27.57■■■□□ 2
VPS52Q8N1B4 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC27.57■■■□□ 2
VPS52Q8N1B4 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC27.57■■■□□ 2
VPS52Q8N1B4 AC022413.1-201ENST00000624602 984 ntBASIC27.57■■■□□ 2
VPS52Q8N1B4 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
VPS52Q8N1B4 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC27.56■■■□□ 2
VPS52Q8N1B4 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC27.56■■■□□ 2
VPS52Q8N1B4 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC27.56■■■□□ 2
VPS52Q8N1B4 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC27.56■■■□□ 2
VPS52Q8N1B4 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC27.56■■■□□ 2
VPS52Q8N1B4 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC27.56■■■□□ 2
VPS52Q8N1B4 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC27.55■■■□□ 2
VPS52Q8N1B4 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC27.55■■■□□ 2
VPS52Q8N1B4 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC27.55■■■□□ 2
VPS52Q8N1B4 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC27.55■■■□□ 2
VPS52Q8N1B4 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC27.54■■■□□ 2
VPS52Q8N1B4 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC27.53■■■□□ 2
VPS52Q8N1B4 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC27.53■■■□□ 2
VPS52Q8N1B4 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC27.53■■■□□ 2
VPS52Q8N1B4 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC27.52■■■□□ 2
VPS52Q8N1B4 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
VPS52Q8N1B4 AL135925.1-201ENST00000605920 1701 ntBASIC27.52■■■□□ 2
VPS52Q8N1B4 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC27.51■■■□□ 2
VPS52Q8N1B4 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
VPS52Q8N1B4 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC27.51■■□□□ 1.99
VPS52Q8N1B4 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC27.51■■□□□ 1.99
VPS52Q8N1B4 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
VPS52Q8N1B4 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
VPS52Q8N1B4 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC27.5■■□□□ 1.99
VPS52Q8N1B4 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
VPS52Q8N1B4 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC27.5■■□□□ 1.99
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms