Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 CEP120-209ENST00000515110 606 ntTSL 3 BASIC31.54■■■□□ 2.64
USP48Q86UV5 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC31.54■■■□□ 2.64
USP48Q86UV5 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC31.53■■■□□ 2.64
USP48Q86UV5 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
USP48Q86UV5 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC31.52■■■□□ 2.64
USP48Q86UV5 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
USP48Q86UV5 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC31.52■■■□□ 2.64
USP48Q86UV5 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
USP48Q86UV5 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC31.51■■■□□ 2.63
USP48Q86UV5 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC31.51■■■□□ 2.63
USP48Q86UV5 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC31.51■■■□□ 2.63
USP48Q86UV5 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
USP48Q86UV5 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC31.5■■■□□ 2.63
USP48Q86UV5 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC31.49■■■□□ 2.63
USP48Q86UV5 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC31.49■■■□□ 2.63
USP48Q86UV5 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
USP48Q86UV5 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
USP48Q86UV5 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC31.46■■■□□ 2.63
USP48Q86UV5 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC31.46■■■□□ 2.63
USP48Q86UV5 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
USP48Q86UV5 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC31.45■■■□□ 2.62
USP48Q86UV5 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC31.44■■■□□ 2.62
USP48Q86UV5 NTF6A-201ENST00000591175 560 ntBASIC31.44■■■□□ 2.62
USP48Q86UV5 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC31.44■■■□□ 2.62
USP48Q86UV5 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
USP48Q86UV5 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
USP48Q86UV5 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
USP48Q86UV5 AC012354.3-201ENST00000623734 483 ntBASIC31.42■■■□□ 2.62
USP48Q86UV5 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
USP48Q86UV5 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
USP48Q86UV5 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC31.41■■■□□ 2.62
USP48Q86UV5 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
USP48Q86UV5 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC31.41■■■□□ 2.62
USP48Q86UV5 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
USP48Q86UV5 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC31.4■■■□□ 2.62
USP48Q86UV5 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC31.4■■■□□ 2.62
USP48Q86UV5 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC31.4■■■□□ 2.62
USP48Q86UV5 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
USP48Q86UV5 SHF-206ENST00000560471 2499 ntTSL 5 BASIC31.39■■■□□ 2.62
USP48Q86UV5 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
USP48Q86UV5 AC022413.1-201ENST00000624602 984 ntBASIC31.39■■■□□ 2.62
USP48Q86UV5 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
USP48Q86UV5 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
USP48Q86UV5 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC31.38■■■□□ 2.61
USP48Q86UV5 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC31.37■■■□□ 2.61
USP48Q86UV5 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC31.37■■■□□ 2.61
USP48Q86UV5 AC139426.1-201ENST00000568218 2529 ntBASIC31.36■■■□□ 2.61
USP48Q86UV5 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
USP48Q86UV5 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
USP48Q86UV5 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC31.34■■■□□ 2.61
USP48Q86UV5 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
USP48Q86UV5 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC31.34■■■□□ 2.61
USP48Q86UV5 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC31.33■■■□□ 2.61
USP48Q86UV5 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC31.33■■■□□ 2.61
USP48Q86UV5 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
USP48Q86UV5 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
USP48Q86UV5 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
USP48Q86UV5 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
USP48Q86UV5 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
USP48Q86UV5 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
USP48Q86UV5 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC31.29■■■□□ 2.6
USP48Q86UV5 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC31.27■■■□□ 2.6
USP48Q86UV5 AL033527.3-201ENST00000566366 1196 ntBASIC31.27■■■□□ 2.6
USP48Q86UV5 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC31.27■■■□□ 2.6
USP48Q86UV5 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
USP48Q86UV5 LINC00273-201ENST00000539813 1452 ntBASIC31.27■■■□□ 2.6
USP48Q86UV5 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC31.26■■■□□ 2.59
USP48Q86UV5 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
USP48Q86UV5 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
USP48Q86UV5 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
USP48Q86UV5 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
USP48Q86UV5 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC31.25■■■□□ 2.59
USP48Q86UV5 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC31.25■■■□□ 2.59
USP48Q86UV5 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC31.24■■■□□ 2.59
USP48Q86UV5 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
USP48Q86UV5 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC31.24■■■□□ 2.59
USP48Q86UV5 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
USP48Q86UV5 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
USP48Q86UV5 AC008813.1-201ENST00000536597 885 ntBASIC31.23■■■□□ 2.59
USP48Q86UV5 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
USP48Q86UV5 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
USP48Q86UV5 HES4-202ENST00000428771 1040 ntTSL 2 BASIC31.22■■■□□ 2.59
USP48Q86UV5 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC31.22■■■□□ 2.59
USP48Q86UV5 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC31.21■■■□□ 2.59
USP48Q86UV5 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
USP48Q86UV5 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC31.21■■■□□ 2.59
USP48Q86UV5 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
USP48Q86UV5 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
USP48Q86UV5 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.59
USP48Q86UV5 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
USP48Q86UV5 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC31.19■■■□□ 2.58
USP48Q86UV5 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC31.19■■■□□ 2.58
USP48Q86UV5 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC31.19■■■□□ 2.58
USP48Q86UV5 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
USP48Q86UV5 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC31.19■■■□□ 2.58
USP48Q86UV5 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
USP48Q86UV5 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC31.18■■■□□ 2.58
USP48Q86UV5 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
USP48Q86UV5 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
USP48Q86UV5 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC31.18■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms