Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 ZNRF2P2-203ENST00000454624 420 ntBASIC25.52■■□□□ 1.68
MSH3P20585 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC25.51■■□□□ 1.68
MSH3P20585 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC25.51■■□□□ 1.67
MSH3P20585 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC25.5■■□□□ 1.67
MSH3P20585 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC25.5■■□□□ 1.67
MSH3P20585 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC25.5■■□□□ 1.67
MSH3P20585 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
MSH3P20585 AP004833.2-201ENST00000532228 1454 ntBASIC25.49■■□□□ 1.67
MSH3P20585 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC25.49■■□□□ 1.67
MSH3P20585 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC25.49■■□□□ 1.67
MSH3P20585 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC25.49■■□□□ 1.67
MSH3P20585 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
MSH3P20585 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC25.48■■□□□ 1.67
MSH3P20585 AC135983.2-203ENST00000454486 1613 ntBASIC25.48■■□□□ 1.67
MSH3P20585 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC25.47■■□□□ 1.67
MSH3P20585 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC25.47■■□□□ 1.67
MSH3P20585 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
MSH3P20585 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.45■■□□□ 1.66
MSH3P20585 WHAMMP2-203ENST00000563942 1603 ntBASIC25.45■■□□□ 1.66
MSH3P20585 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC25.44■■□□□ 1.66
MSH3P20585 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
MSH3P20585 LINC01971-201ENST00000617888 1048 ntBASIC25.43■■□□□ 1.66
MSH3P20585 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
MSH3P20585 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
MSH3P20585 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC25.43■■□□□ 1.66
MSH3P20585 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
MSH3P20585 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
MSH3P20585 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
MSH3P20585 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
MSH3P20585 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
MSH3P20585 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC25.41■■□□□ 1.66
MSH3P20585 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC25.41■■□□□ 1.66
MSH3P20585 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
MSH3P20585 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
MSH3P20585 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
MSH3P20585 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC25.4■■□□□ 1.66
MSH3P20585 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC25.4■■□□□ 1.66
MSH3P20585 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC25.39■■□□□ 1.66
MSH3P20585 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC25.39■■□□□ 1.66
MSH3P20585 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
MSH3P20585 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC25.39■■□□□ 1.65
MSH3P20585 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC25.39■■□□□ 1.65
MSH3P20585 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
MSH3P20585 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC25.38■■□□□ 1.65
MSH3P20585 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC25.37■■□□□ 1.65
MSH3P20585 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
MSH3P20585 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
MSH3P20585 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
MSH3P20585 MEST-211ENST00000437945 1455 ntTSL 5 BASIC25.37■■□□□ 1.65
MSH3P20585 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC25.37■■□□□ 1.65
MSH3P20585 MIR7108-201ENST00000614319 87 ntBASIC25.37■■□□□ 1.65
MSH3P20585 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
MSH3P20585 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
MSH3P20585 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
MSH3P20585 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC25.36■■□□□ 1.65
MSH3P20585 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC25.35■■□□□ 1.65
MSH3P20585 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
MSH3P20585 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
MSH3P20585 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC25.35■■□□□ 1.65
MSH3P20585 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC25.34■■□□□ 1.65
MSH3P20585 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC25.34■■□□□ 1.65
MSH3P20585 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
MSH3P20585 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
MSH3P20585 DUX4L11-201ENST00000611504 1267 ntBASIC25.33■■□□□ 1.65
MSH3P20585 DUX4L12-201ENST00000614593 1267 ntBASIC25.33■■□□□ 1.65
MSH3P20585 DUX4L14-201ENST00000621227 1267 ntBASIC25.33■■□□□ 1.65
MSH3P20585 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC25.33■■□□□ 1.64
MSH3P20585 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC25.32■■□□□ 1.64
MSH3P20585 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
MSH3P20585 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
MSH3P20585 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC25.32■■□□□ 1.64
MSH3P20585 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC25.31■■□□□ 1.64
MSH3P20585 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
MSH3P20585 AC100797.4-201ENST00000631653 1827 ntBASIC25.31■■□□□ 1.64
MSH3P20585 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
MSH3P20585 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
MSH3P20585 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC25.3■■□□□ 1.64
MSH3P20585 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC25.29■■□□□ 1.64
MSH3P20585 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
MSH3P20585 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.29■■□□□ 1.64
MSH3P20585 CHML-204ENST00000638121 920 ntTSL 2 BASIC25.29■■□□□ 1.64
MSH3P20585 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
MSH3P20585 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC25.29■■□□□ 1.64
MSH3P20585 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC25.29■■□□□ 1.64
MSH3P20585 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC25.28■■□□□ 1.64
MSH3P20585 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
MSH3P20585 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC25.28■■□□□ 1.64
MSH3P20585 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC25.28■■□□□ 1.64
MSH3P20585 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC25.28■■□□□ 1.64
MSH3P20585 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
MSH3P20585 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
MSH3P20585 DUX4L13-201ENST00000554103 1267 ntBASIC25.27■■□□□ 1.64
MSH3P20585 DUX4L15-201ENST00000611059 1267 ntBASIC25.27■■□□□ 1.64
MSH3P20585 DUX4L23-201ENST00000615195 1269 ntBASIC25.27■■□□□ 1.64
MSH3P20585 DUX4L24-201ENST00000617576 1269 ntBASIC25.27■■□□□ 1.64
MSH3P20585 DUX4L22-201ENST00000618238 1269 ntBASIC25.27■■□□□ 1.64
MSH3P20585 DUX4L20-201ENST00000619712 1269 ntBASIC25.27■■□□□ 1.64
MSH3P20585 DUX4L21-201ENST00000622058 1269 ntBASIC25.27■■□□□ 1.64
MSH3P20585 DUX4L10-201ENST00000622460 1267 ntBASIC25.27■■□□□ 1.64
MSH3P20585 DUX4L25-201ENST00000624915 1269 ntBASIC25.27■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms