Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 CHST11-203ENST00000547956 936 ntTSL 2 BASIC39.69■■■■□ 3.94
RAPGEF3O95398 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC39.69■■■■□ 3.94
RAPGEF3O95398 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC39.69■■■■□ 3.94
RAPGEF3O95398 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC39.67■■■■□ 3.94
RAPGEF3O95398 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC39.67■■■■□ 3.94
RAPGEF3O95398 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC39.66■■■■□ 3.94
RAPGEF3O95398 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC39.66■■■■□ 3.94
RAPGEF3O95398 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC39.66■■■■□ 3.94
RAPGEF3O95398 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC39.64■■■■□ 3.94
RAPGEF3O95398 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC39.64■■■■□ 3.94
RAPGEF3O95398 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC39.63■■■■□ 3.93
RAPGEF3O95398 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC39.63■■■■□ 3.93
RAPGEF3O95398 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC39.62■■■■□ 3.93
RAPGEF3O95398 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC39.6■■■■□ 3.93
RAPGEF3O95398 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC39.6■■■■□ 3.93
RAPGEF3O95398 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC39.6■■■■□ 3.93
RAPGEF3O95398 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC39.59■■■■□ 3.93
RAPGEF3O95398 HES4-204ENST00000484667 667 ntTSL 3 BASIC39.59■■■■□ 3.93
RAPGEF3O95398 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC39.59■■■■□ 3.93
RAPGEF3O95398 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC39.59■■■■□ 3.93
RAPGEF3O95398 AC120057.4-201ENST00000624722 1615 ntBASIC39.58■■■■□ 3.93
RAPGEF3O95398 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC39.58■■■■□ 3.93
RAPGEF3O95398 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC39.57■■■■□ 3.93
RAPGEF3O95398 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC39.57■■■■□ 3.93
RAPGEF3O95398 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC39.57■■■■□ 3.93
RAPGEF3O95398 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC39.57■■■■□ 3.92
RAPGEF3O95398 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC39.57■■■■□ 3.92
RAPGEF3O95398 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC39.56■■■■□ 3.92
RAPGEF3O95398 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC39.55■■■■□ 3.92
RAPGEF3O95398 AC092296.2-201ENST00000589470 999 ntBASIC39.54■■■■□ 3.92
RAPGEF3O95398 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC39.53■■■■□ 3.92
RAPGEF3O95398 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC39.52■■■■□ 3.92
RAPGEF3O95398 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC39.51■■■■□ 3.92
RAPGEF3O95398 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC39.51■■■■□ 3.92
RAPGEF3O95398 AL592295.1-201ENST00000400984 884 ntBASIC39.51■■■■□ 3.92
RAPGEF3O95398 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC39.51■■■■□ 3.92
RAPGEF3O95398 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC39.51■■■■□ 3.92
RAPGEF3O95398 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC39.5■■■■□ 3.91
RAPGEF3O95398 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC39.5■■■■□ 3.91
RAPGEF3O95398 AL035685.1-201ENST00000636663 812 ntBASIC39.5■■■■□ 3.91
RAPGEF3O95398 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC39.5■■■■□ 3.91
RAPGEF3O95398 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC39.48■■■■□ 3.91
RAPGEF3O95398 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC39.48■■■■□ 3.91
RAPGEF3O95398 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC39.48■■■■□ 3.91
RAPGEF3O95398 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC39.47■■■■□ 3.91
RAPGEF3O95398 AC148477.6-201ENST00000623746 465 ntBASIC39.47■■■■□ 3.91
RAPGEF3O95398 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC39.46■■■■□ 3.91
RAPGEF3O95398 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC39.46■■■■□ 3.91
RAPGEF3O95398 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC39.45■■■■□ 3.91
RAPGEF3O95398 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC39.45■■■■□ 3.91
RAPGEF3O95398 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC39.45■■■■□ 3.91
RAPGEF3O95398 AC010864.1-201ENST00000609407 1511 ntBASIC39.45■■■■□ 3.91
RAPGEF3O95398 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC39.44■■■■□ 3.9
RAPGEF3O95398 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC39.44■■■■□ 3.9
RAPGEF3O95398 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC39.44■■■■□ 3.9
RAPGEF3O95398 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC39.43■■■■□ 3.9
RAPGEF3O95398 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC39.43■■■■□ 3.9
RAPGEF3O95398 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC39.43■■■■□ 3.9
RAPGEF3O95398 WHAMMP2-203ENST00000563942 1603 ntBASIC39.43■■■■□ 3.9
RAPGEF3O95398 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC39.43■■■■□ 3.9
RAPGEF3O95398 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC39.42■■■■□ 3.9
RAPGEF3O95398 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC39.41■■■■□ 3.9
RAPGEF3O95398 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC39.41■■■■□ 3.9
RAPGEF3O95398 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC39.41■■■■□ 3.9
RAPGEF3O95398 AC019069.1-201ENST00000610008 1333 ntBASIC39.4■■■■□ 3.9
RAPGEF3O95398 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC39.4■■■■□ 3.9
RAPGEF3O95398 AL451085.2-201ENST00000605085 799 ntBASIC39.4■■■■□ 3.9
RAPGEF3O95398 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC39.39■■■■□ 3.9
RAPGEF3O95398 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC39.39■■■■□ 3.9
RAPGEF3O95398 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC39.38■■■■□ 3.89
RAPGEF3O95398 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC39.38■■■■□ 3.89
RAPGEF3O95398 MTURN-203ENST00000409688 843 ntTSL 2 BASIC39.38■■■■□ 3.89
RAPGEF3O95398 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC39.38■■■■□ 3.89
RAPGEF3O95398 AL161658.1-201ENST00000623641 1967 ntBASIC39.38■■■■□ 3.89
RAPGEF3O95398 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC39.38■■■■□ 3.89
RAPGEF3O95398 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC39.37■■■■□ 3.89
RAPGEF3O95398 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC39.37■■■■□ 3.89
RAPGEF3O95398 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC39.37■■■■□ 3.89
RAPGEF3O95398 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC39.37■■■■□ 3.89
RAPGEF3O95398 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC39.37■■■■□ 3.89
RAPGEF3O95398 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC39.37■■■■□ 3.89
RAPGEF3O95398 AC135983.2-203ENST00000454486 1613 ntBASIC39.36■■■■□ 3.89
RAPGEF3O95398 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC39.36■■■■□ 3.89
RAPGEF3O95398 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC39.36■■■■□ 3.89
RAPGEF3O95398 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC39.36■■■■□ 3.89
RAPGEF3O95398 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC39.36■■■■□ 3.89
RAPGEF3O95398 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC39.36■■■■□ 3.89
RAPGEF3O95398 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC39.35■■■■□ 3.89
RAPGEF3O95398 ECEL1P2-201ENST00000461596 1295 ntBASIC39.35■■■■□ 3.89
RAPGEF3O95398 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC39.34■■■■□ 3.89
RAPGEF3O95398 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC39.34■■■■□ 3.89
RAPGEF3O95398 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC39.34■■■■□ 3.89
RAPGEF3O95398 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC39.34■■■■□ 3.89
RAPGEF3O95398 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC39.32■■■■□ 3.89
RAPGEF3O95398 AC129492.7-201ENST00000622992 756 ntBASIC39.32■■■■□ 3.89
RAPGEF3O95398 AC110285.7-201ENST00000624417 1536 ntBASIC39.31■■■■□ 3.88
RAPGEF3O95398 TRIR-205ENST00000592273 783 ntTSL 3 BASIC39.31■■■■□ 3.88
RAPGEF3O95398 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC39.3■■■■□ 3.88
RAPGEF3O95398 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC39.3■■■■□ 3.88
RAPGEF3O95398 MIR219A2-201ENST00000608502 1504 ntBASIC39.3■■■■□ 3.88
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms