Protein–RNA interactions for Protein: O60341

KDM1A, Lysine-specific histone demethylase 1A, humanhuman

Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDM1AO60341 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
KDM1AO60341 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
KDM1AO60341 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
KDM1AO60341 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
KDM1AO60341 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC25.02■■□□□ 1.6
KDM1AO60341 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
KDM1AO60341 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
KDM1AO60341 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC25.01■■□□□ 1.59
KDM1AO60341 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
KDM1AO60341 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
KDM1AO60341 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
KDM1AO60341 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
KDM1AO60341 AC135983.2-203ENST00000454486 1613 ntBASIC25■■□□□ 1.59
KDM1AO60341 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC25■■□□□ 1.59
KDM1AO60341 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC24.99■■□□□ 1.59
KDM1AO60341 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
KDM1AO60341 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC24.99■■□□□ 1.59
KDM1AO60341 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
KDM1AO60341 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
KDM1AO60341 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
KDM1AO60341 AGPS-202ENST00000409888 815 ntTSL 4 BASIC24.98■■□□□ 1.59
KDM1AO60341 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
KDM1AO60341 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC24.98■■□□□ 1.59
KDM1AO60341 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
KDM1AO60341 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
KDM1AO60341 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC24.98■■□□□ 1.59
KDM1AO60341 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
KDM1AO60341 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC24.97■■□□□ 1.59
KDM1AO60341 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC24.97■■□□□ 1.59
KDM1AO60341 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC24.97■■□□□ 1.59
KDM1AO60341 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
KDM1AO60341 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC24.96■■□□□ 1.59
KDM1AO60341 DUX4L11-201ENST00000611504 1267 ntBASIC24.96■■□□□ 1.59
KDM1AO60341 DUX4L12-201ENST00000614593 1267 ntBASIC24.96■■□□□ 1.59
KDM1AO60341 DUX4L14-201ENST00000621227 1267 ntBASIC24.96■■□□□ 1.59
KDM1AO60341 MEST-211ENST00000437945 1455 ntTSL 5 BASIC24.95■■□□□ 1.58
KDM1AO60341 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC24.94■■□□□ 1.58
KDM1AO60341 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
KDM1AO60341 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
KDM1AO60341 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
KDM1AO60341 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
KDM1AO60341 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC24.93■■□□□ 1.58
KDM1AO60341 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC24.93■■□□□ 1.58
KDM1AO60341 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
KDM1AO60341 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
KDM1AO60341 AL139393.2-201ENST00000608721 2025 ntBASIC24.92■■□□□ 1.58
KDM1AO60341 RNF166-209ENST00000567844 633 ntTSL 5 BASIC24.92■■□□□ 1.58
KDM1AO60341 WHAMMP2-203ENST00000563942 1603 ntBASIC24.92■■□□□ 1.58
KDM1AO60341 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC24.91■■□□□ 1.58
KDM1AO60341 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
KDM1AO60341 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
KDM1AO60341 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
KDM1AO60341 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
KDM1AO60341 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC24.9■■□□□ 1.58
KDM1AO60341 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC24.9■■□□□ 1.58
KDM1AO60341 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC24.9■■□□□ 1.58
KDM1AO60341 MACF1-219ENST00000484793 834 ntTSL 2 BASIC24.9■■□□□ 1.58
KDM1AO60341 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC24.9■■□□□ 1.58
KDM1AO60341 DUX4L13-201ENST00000554103 1267 ntBASIC24.9■■□□□ 1.58
KDM1AO60341 DUX4L15-201ENST00000611059 1267 ntBASIC24.9■■□□□ 1.58
KDM1AO60341 DUX4L23-201ENST00000615195 1269 ntBASIC24.9■■□□□ 1.58
KDM1AO60341 DUX4L24-201ENST00000617576 1269 ntBASIC24.9■■□□□ 1.58
KDM1AO60341 DUX4L22-201ENST00000618238 1269 ntBASIC24.9■■□□□ 1.58
KDM1AO60341 DUX4L20-201ENST00000619712 1269 ntBASIC24.9■■□□□ 1.58
KDM1AO60341 DUX4L21-201ENST00000622058 1269 ntBASIC24.9■■□□□ 1.58
KDM1AO60341 DUX4L10-201ENST00000622460 1267 ntBASIC24.9■■□□□ 1.58
KDM1AO60341 DUX4L25-201ENST00000624915 1269 ntBASIC24.9■■□□□ 1.58
KDM1AO60341 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
KDM1AO60341 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
KDM1AO60341 CHML-204ENST00000638121 920 ntTSL 2 BASIC24.89■■□□□ 1.58
KDM1AO60341 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
KDM1AO60341 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC24.88■■□□□ 1.57
KDM1AO60341 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC24.88■■□□□ 1.57
KDM1AO60341 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC24.88■■□□□ 1.57
KDM1AO60341 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
KDM1AO60341 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
KDM1AO60341 PVT1-219ENST00000523427 938 ntTSL 3 BASIC24.87■■□□□ 1.57
KDM1AO60341 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC24.87■■□□□ 1.57
KDM1AO60341 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
KDM1AO60341 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
KDM1AO60341 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC24.86■■□□□ 1.57
KDM1AO60341 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
KDM1AO60341 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
KDM1AO60341 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC24.85■■□□□ 1.57
KDM1AO60341 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
KDM1AO60341 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
KDM1AO60341 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
KDM1AO60341 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC24.84■■□□□ 1.57
KDM1AO60341 SHF-206ENST00000560471 2499 ntTSL 5 BASIC24.84■■□□□ 1.57
KDM1AO60341 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
KDM1AO60341 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC24.83■■□□□ 1.57
KDM1AO60341 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
KDM1AO60341 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC24.82■■□□□ 1.56
KDM1AO60341 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC24.82■■□□□ 1.56
KDM1AO60341 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
KDM1AO60341 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC24.82■■□□□ 1.56
KDM1AO60341 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC24.82■■□□□ 1.56
KDM1AO60341 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC24.82■■□□□ 1.56
KDM1AO60341 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC24.8■■□□□ 1.56
KDM1AO60341 MIR3648-2-201ENST00000581792 180 ntBASIC24.8■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms