Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
PCDHB3Q9Y5E6 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.12■□□□□ 0.65
PCDHB3Q9Y5E6 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHB3Q9Y5E6 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHB3Q9Y5E6 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHB3Q9Y5E6 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHB3Q9Y5E6 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHB3Q9Y5E6 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHB3Q9Y5E6 KRT17P2-201ENST00000300992 1314 ntBASIC19.12■□□□□ 0.65
PCDHB3Q9Y5E6 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHB3Q9Y5E6 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHB3Q9Y5E6 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
PCDHB3Q9Y5E6 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHB3Q9Y5E6 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.12■□□□□ 0.65
PCDHB3Q9Y5E6 AC133681.1-201ENST00000465482 601 ntBASIC19.12■□□□□ 0.65
PCDHB3Q9Y5E6 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.12■□□□□ 0.65
PCDHB3Q9Y5E6 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.12■□□□□ 0.65
PCDHB3Q9Y5E6 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
PCDHB3Q9Y5E6 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHB3Q9Y5E6 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHB3Q9Y5E6 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 REXO1L12P-201ENST00000622156 912 ntBASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 TMEM179-206ENST00000616017 1645 ntBASIC19.11■□□□□ 0.65
PCDHB3Q9Y5E6 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PCDHB3Q9Y5E6 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 AL135905.2-201ENST00000584934 1404 ntBASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 AC239809.2-201ENST00000415381 517 ntBASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 AC012618.2-201ENST00000428058 849 ntBASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms