Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 TMEM179-206ENST00000616017 1645 ntBASIC21.56■■□□□ 1.04
NOD1Q9Y239 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NOD1Q9Y239 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC21.56■■□□□ 1.04
NOD1Q9Y239 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC21.56■■□□□ 1.04
NOD1Q9Y239 UPK3BP1-201ENST00000428678 509 ntBASIC21.56■■□□□ 1.04
NOD1Q9Y239 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC21.56■■□□□ 1.04
NOD1Q9Y239 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NOD1Q9Y239 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC21.56■■□□□ 1.04
NOD1Q9Y239 AC091076.1-201ENST00000610741 619 ntBASIC21.56■■□□□ 1.04
NOD1Q9Y239 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NOD1Q9Y239 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NOD1Q9Y239 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
NOD1Q9Y239 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
NOD1Q9Y239 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC21.56■■□□□ 1.04
NOD1Q9Y239 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.55■■□□□ 1.04
NOD1Q9Y239 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC21.55■■□□□ 1.04
NOD1Q9Y239 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NOD1Q9Y239 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NOD1Q9Y239 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NOD1Q9Y239 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
NOD1Q9Y239 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC21.55■■□□□ 1.04
NOD1Q9Y239 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
NOD1Q9Y239 RNF152P1-201ENST00000397754 604 ntBASIC21.55■■□□□ 1.04
NOD1Q9Y239 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC21.55■■□□□ 1.04
NOD1Q9Y239 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC21.55■■□□□ 1.04
NOD1Q9Y239 AC091390.4-202ENST00000476426 537 ntBASIC21.55■■□□□ 1.04
NOD1Q9Y239 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC21.55■■□□□ 1.04
NOD1Q9Y239 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.55■■□□□ 1.04
NOD1Q9Y239 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
NOD1Q9Y239 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
NOD1Q9Y239 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NOD1Q9Y239 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NOD1Q9Y239 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
NOD1Q9Y239 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
NOD1Q9Y239 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.55■■□□□ 1.04
NOD1Q9Y239 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NOD1Q9Y239 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NOD1Q9Y239 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
NOD1Q9Y239 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC21.54■■□□□ 1.04
NOD1Q9Y239 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NOD1Q9Y239 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC21.54■■□□□ 1.04
NOD1Q9Y239 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NOD1Q9Y239 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC21.54■■□□□ 1.04
NOD1Q9Y239 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
NOD1Q9Y239 DERL1-203ENST00000419562 918 ntTSL 2 BASIC21.54■■□□□ 1.04
NOD1Q9Y239 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC21.54■■□□□ 1.04
NOD1Q9Y239 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC21.54■■□□□ 1.04
NOD1Q9Y239 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC21.54■■□□□ 1.04
NOD1Q9Y239 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC21.54■■□□□ 1.04
NOD1Q9Y239 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC21.54■■□□□ 1.04
NOD1Q9Y239 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC21.54■■□□□ 1.04
NOD1Q9Y239 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC21.54■■□□□ 1.04
NOD1Q9Y239 AL358472.4-201ENST00000633140 710 ntBASIC21.54■■□□□ 1.04
NOD1Q9Y239 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
NOD1Q9Y239 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
NOD1Q9Y239 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
NOD1Q9Y239 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
NOD1Q9Y239 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
NOD1Q9Y239 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
NOD1Q9Y239 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NOD1Q9Y239 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.54■■□□□ 1.04
NOD1Q9Y239 KRT8P8-201ENST00000434750 1448 ntBASIC21.54■■□□□ 1.04
NOD1Q9Y239 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC21.54■■□□□ 1.04
NOD1Q9Y239 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.53■■□□□ 1.04
NOD1Q9Y239 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC21.53■■□□□ 1.04
NOD1Q9Y239 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC21.53■■□□□ 1.04
NOD1Q9Y239 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
NOD1Q9Y239 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NOD1Q9Y239 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
NOD1Q9Y239 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC21.53■■□□□ 1.04
NOD1Q9Y239 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
NOD1Q9Y239 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC21.53■■□□□ 1.04
NOD1Q9Y239 AC010653.2-201ENST00000623505 997 ntBASIC21.53■■□□□ 1.04
NOD1Q9Y239 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NOD1Q9Y239 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
NOD1Q9Y239 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
NOD1Q9Y239 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC21.53■■□□□ 1.04
NOD1Q9Y239 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NOD1Q9Y239 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NOD1Q9Y239 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC21.53■■□□□ 1.04
NOD1Q9Y239 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NOD1Q9Y239 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC21.53■■□□□ 1.04
NOD1Q9Y239 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
NOD1Q9Y239 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NOD1Q9Y239 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
NOD1Q9Y239 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC21.52■■□□□ 1.04
NOD1Q9Y239 AC007663.1-201ENST00000438948 1240 ntBASIC21.52■■□□□ 1.04
NOD1Q9Y239 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC21.52■■□□□ 1.04
NOD1Q9Y239 COX11P1-201ENST00000489116 835 ntBASIC21.52■■□□□ 1.04
NOD1Q9Y239 YBX1P2-201ENST00000489612 999 ntBASIC21.52■■□□□ 1.04
NOD1Q9Y239 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NOD1Q9Y239 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC21.52■■□□□ 1.04
NOD1Q9Y239 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NOD1Q9Y239 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC21.52■■□□□ 1.04
NOD1Q9Y239 AL138966.2-201ENST00000621997 464 ntBASIC21.52■■□□□ 1.04
NOD1Q9Y239 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NOD1Q9Y239 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
NOD1Q9Y239 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NOD1Q9Y239 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NOD1Q9Y239 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms