Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RN7SL471P-201ENST00000580476 299 ntBASIC18.88■□□□□ 0.61
VPS4AQ9UN37 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.87■□□□□ 0.61
VPS4AQ9UN37 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS4AQ9UN37 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS4AQ9UN37 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS4AQ9UN37 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VPS4AQ9UN37 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS4AQ9UN37 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.87■□□□□ 0.61
VPS4AQ9UN37 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS4AQ9UN37 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS4AQ9UN37 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.87■□□□□ 0.61
VPS4AQ9UN37 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS4AQ9UN37 MCRIP2P1-201ENST00000394346 511 ntBASIC18.87■□□□□ 0.61
VPS4AQ9UN37 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
VPS4AQ9UN37 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS4AQ9UN37 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.87■□□□□ 0.61
VPS4AQ9UN37 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.87■□□□□ 0.61
VPS4AQ9UN37 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VPS4AQ9UN37 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.87■□□□□ 0.61
VPS4AQ9UN37 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.87■□□□□ 0.61
VPS4AQ9UN37 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.87■□□□□ 0.61
VPS4AQ9UN37 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
VPS4AQ9UN37 AC116562.4-201ENST00000641316 2276 ntBASIC18.87■□□□□ 0.61
VPS4AQ9UN37 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
VPS4AQ9UN37 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS4AQ9UN37 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.86■□□□□ 0.61
VPS4AQ9UN37 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
VPS4AQ9UN37 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4AQ9UN37 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4AQ9UN37 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4AQ9UN37 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4AQ9UN37 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4AQ9UN37 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
VPS4AQ9UN37 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4AQ9UN37 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4AQ9UN37 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
VPS4AQ9UN37 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.86■□□□□ 0.61
VPS4AQ9UN37 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
VPS4AQ9UN37 AC100791.3-201ENST00000617619 330 ntBASIC18.86■□□□□ 0.61
VPS4AQ9UN37 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.86■□□□□ 0.61
VPS4AQ9UN37 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.86■□□□□ 0.61
VPS4AQ9UN37 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS4AQ9UN37 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4AQ9UN37 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.86■□□□□ 0.61
VPS4AQ9UN37 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4AQ9UN37 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.86■□□□□ 0.61
VPS4AQ9UN37 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4AQ9UN37 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 KRT17P1-201ENST00000399211 1546 ntBASIC18.85■□□□□ 0.61
VPS4AQ9UN37 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 AL355472.2-201ENST00000422958 438 ntBASIC18.85■□□□□ 0.61
VPS4AQ9UN37 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 AC092368.3-202ENST00000574180 1591 ntBASIC18.85■□□□□ 0.61
VPS4AQ9UN37 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4AQ9UN37 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.84■□□□□ 0.61
VPS4AQ9UN37 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
VPS4AQ9UN37 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4AQ9UN37 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4AQ9UN37 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.84■□□□□ 0.61
VPS4AQ9UN37 KRT17P2-201ENST00000300992 1314 ntBASIC18.84■□□□□ 0.61
VPS4AQ9UN37 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4AQ9UN37 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4AQ9UN37 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4AQ9UN37 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4AQ9UN37 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.84■□□□□ 0.61
VPS4AQ9UN37 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
VPS4AQ9UN37 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4AQ9UN37 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4AQ9UN37 PNMA6B-201ENST00000538162 1200 ntBASIC18.84■□□□□ 0.61
VPS4AQ9UN37 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
VPS4AQ9UN37 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4AQ9UN37 AL589743.5-201ENST00000616611 1050 ntBASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms