Protein–RNA interactions for Protein: Q9P219

CCDC88C, Protein Daple, humanhuman

Predictions only

Length 2,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88CQ9P219 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC88CQ9P219 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88CQ9P219 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88CQ9P219 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88CQ9P219 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC88CQ9P219 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88CQ9P219 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC88CQ9P219 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC88CQ9P219 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88CQ9P219 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88CQ9P219 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88CQ9P219 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88CQ9P219 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88CQ9P219 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88CQ9P219 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
CCDC88CQ9P219 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC88CQ9P219 BX088651.1-201ENST00000540551 451 ntBASIC18.66■□□□□ 0.58
CCDC88CQ9P219 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88CQ9P219 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CCDC88CQ9P219 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CCDC88CQ9P219 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC88CQ9P219 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CCDC88CQ9P219 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88CQ9P219 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.66■□□□□ 0.58
CCDC88CQ9P219 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CCDC88CQ9P219 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC88CQ9P219 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
CCDC88CQ9P219 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CCDC88CQ9P219 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88CQ9P219 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.65■□□□□ 0.58
CCDC88CQ9P219 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 AL135905.2-201ENST00000584934 1404 ntBASIC18.65■□□□□ 0.58
CCDC88CQ9P219 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88CQ9P219 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
CCDC88CQ9P219 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
CCDC88CQ9P219 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
CCDC88CQ9P219 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.64■□□□□ 0.58
CCDC88CQ9P219 LINC01023-201ENST00000606054 436 ntBASIC18.64■□□□□ 0.58
CCDC88CQ9P219 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC88CQ9P219 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.64■□□□□ 0.57
CCDC88CQ9P219 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.64■□□□□ 0.57
CCDC88CQ9P219 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
CCDC88CQ9P219 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC88CQ9P219 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC88CQ9P219 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.64■□□□□ 0.57
CCDC88CQ9P219 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
CCDC88CQ9P219 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
CCDC88CQ9P219 YBX1P10-201ENST00000444752 975 ntBASIC18.64■□□□□ 0.57
CCDC88CQ9P219 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.64■□□□□ 0.57
CCDC88CQ9P219 PRKY-204ENST00000533551 1019 ntBASIC18.64■□□□□ 0.57
CCDC88CQ9P219 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.64■□□□□ 0.57
CCDC88CQ9P219 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.64■□□□□ 0.57
CCDC88CQ9P219 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC88CQ9P219 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CCDC88CQ9P219 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC88CQ9P219 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88CQ9P219 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC88CQ9P219 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88CQ9P219 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88CQ9P219 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88CQ9P219 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88CQ9P219 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC88CQ9P219 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC88CQ9P219 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.63■□□□□ 0.57
CCDC88CQ9P219 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88CQ9P219 TSPY15P-201ENST00000457163 923 ntBASIC18.63■□□□□ 0.57
CCDC88CQ9P219 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88CQ9P219 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC88CQ9P219 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC88CQ9P219 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
CCDC88CQ9P219 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC88CQ9P219 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88CQ9P219 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88CQ9P219 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88CQ9P219 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CCDC88CQ9P219 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CCDC88CQ9P219 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms