Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC21■□□□□ 0.95
SIX2Q9NPC8 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SIX2Q9NPC8 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
SIX2Q9NPC8 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SIX2Q9NPC8 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC21■□□□□ 0.95
SIX2Q9NPC8 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
SIX2Q9NPC8 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC21■□□□□ 0.95
SIX2Q9NPC8 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC21■□□□□ 0.95
SIX2Q9NPC8 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SIX2Q9NPC8 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SIX2Q9NPC8 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
SIX2Q9NPC8 ID1-201ENST00000376105 1233 ntBASIC21■□□□□ 0.95
SIX2Q9NPC8 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC21■□□□□ 0.95
SIX2Q9NPC8 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC21■□□□□ 0.95
SIX2Q9NPC8 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC21■□□□□ 0.95
SIX2Q9NPC8 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC21■□□□□ 0.95
SIX2Q9NPC8 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21■□□□□ 0.95
SIX2Q9NPC8 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21■□□□□ 0.95
SIX2Q9NPC8 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SIX2Q9NPC8 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC21■□□□□ 0.95
SIX2Q9NPC8 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SIX2Q9NPC8 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC21■□□□□ 0.95
SIX2Q9NPC8 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
SIX2Q9NPC8 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC21■□□□□ 0.95
SIX2Q9NPC8 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
SIX2Q9NPC8 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SIX2Q9NPC8 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SIX2Q9NPC8 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SIX2Q9NPC8 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SIX2Q9NPC8 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.99■□□□□ 0.95
SIX2Q9NPC8 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SIX2Q9NPC8 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.99■□□□□ 0.95
SIX2Q9NPC8 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SIX2Q9NPC8 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SIX2Q9NPC8 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.99■□□□□ 0.95
SIX2Q9NPC8 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.99■□□□□ 0.95
SIX2Q9NPC8 KRT18P16-201ENST00000510337 1294 ntBASIC20.99■□□□□ 0.95
SIX2Q9NPC8 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SIX2Q9NPC8 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SIX2Q9NPC8 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.99■□□□□ 0.95
SIX2Q9NPC8 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SIX2Q9NPC8 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SIX2Q9NPC8 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SIX2Q9NPC8 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SIX2Q9NPC8 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
SIX2Q9NPC8 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SIX2Q9NPC8 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SIX2Q9NPC8 TEX21P-204ENST00000641479 1693 ntBASIC20.99■□□□□ 0.95
SIX2Q9NPC8 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SIX2Q9NPC8 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SIX2Q9NPC8 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
SIX2Q9NPC8 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SIX2Q9NPC8 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SIX2Q9NPC8 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
SIX2Q9NPC8 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SIX2Q9NPC8 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SIX2Q9NPC8 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.98■□□□□ 0.95
SIX2Q9NPC8 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.98■□□□□ 0.95
SIX2Q9NPC8 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
SIX2Q9NPC8 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SIX2Q9NPC8 TNXA-203ENST00000507684 2038 ntBASIC20.98■□□□□ 0.95
SIX2Q9NPC8 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.98■□□□□ 0.95
SIX2Q9NPC8 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SIX2Q9NPC8 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
SIX2Q9NPC8 LINC01465-201ENST00000408887 1940 ntBASIC20.98■□□□□ 0.95
SIX2Q9NPC8 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
SIX2Q9NPC8 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SIX2Q9NPC8 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.98■□□□□ 0.95
SIX2Q9NPC8 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC20.97■□□□□ 0.95
SIX2Q9NPC8 AC104417.2-201ENST00000562989 1793 ntBASIC20.97■□□□□ 0.95
SIX2Q9NPC8 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
SIX2Q9NPC8 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SIX2Q9NPC8 KRT8P8-201ENST00000434750 1448 ntBASIC20.97■□□□□ 0.95
SIX2Q9NPC8 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SIX2Q9NPC8 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SIX2Q9NPC8 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.97■□□□□ 0.95
SIX2Q9NPC8 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SIX2Q9NPC8 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SIX2Q9NPC8 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.97■□□□□ 0.95
SIX2Q9NPC8 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
SIX2Q9NPC8 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
SIX2Q9NPC8 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
SIX2Q9NPC8 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.97■□□□□ 0.95
SIX2Q9NPC8 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
SIX2Q9NPC8 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC20.97■□□□□ 0.95
SIX2Q9NPC8 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.97■□□□□ 0.95
SIX2Q9NPC8 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SIX2Q9NPC8 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.97■□□□□ 0.95
SIX2Q9NPC8 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SIX2Q9NPC8 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SIX2Q9NPC8 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SIX2Q9NPC8 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SIX2Q9NPC8 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
SIX2Q9NPC8 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms