Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
MMP28Q9H239 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
MMP28Q9H239 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
MMP28Q9H239 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MMP28Q9H239 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
MMP28Q9H239 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
MMP28Q9H239 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MMP28Q9H239 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.2■□□□□ 0.34
MMP28Q9H239 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MMP28Q9H239 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MMP28Q9H239 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
MMP28Q9H239 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
MMP28Q9H239 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC17.19■□□□□ 0.34
MMP28Q9H239 AIRN-201ENST00000601203 4374 ntBASIC17.19■□□□□ 0.34
MMP28Q9H239 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MMP28Q9H239 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
MMP28Q9H239 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MMP28Q9H239 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC17.19■□□□□ 0.34
MMP28Q9H239 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.19■□□□□ 0.34
MMP28Q9H239 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
MMP28Q9H239 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MMP28Q9H239 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
MMP28Q9H239 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC17.19■□□□□ 0.34
MMP28Q9H239 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.19■□□□□ 0.34
MMP28Q9H239 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
MMP28Q9H239 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
MMP28Q9H239 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.19■□□□□ 0.34
MMP28Q9H239 AC068880.1-201ENST00000507289 2297 ntBASIC17.19■□□□□ 0.34
MMP28Q9H239 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MMP28Q9H239 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
MMP28Q9H239 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC17.19■□□□□ 0.34
MMP28Q9H239 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC17.19■□□□□ 0.34
MMP28Q9H239 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.19■□□□□ 0.34
MMP28Q9H239 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MMP28Q9H239 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.19■□□□□ 0.34
MMP28Q9H239 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
MMP28Q9H239 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.19■□□□□ 0.34
MMP28Q9H239 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.19■□□□□ 0.34
MMP28Q9H239 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.19■□□□□ 0.34
MMP28Q9H239 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MMP28Q9H239 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.19■□□□□ 0.34
MMP28Q9H239 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
MMP28Q9H239 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.19■□□□□ 0.34
MMP28Q9H239 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MMP28Q9H239 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
MMP28Q9H239 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC17.18■□□□□ 0.34
MMP28Q9H239 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC17.18■□□□□ 0.34
MMP28Q9H239 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MMP28Q9H239 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC17.18■□□□□ 0.34
MMP28Q9H239 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MMP28Q9H239 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC17.18■□□□□ 0.34
MMP28Q9H239 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MMP28Q9H239 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC17.18■□□□□ 0.34
MMP28Q9H239 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC17.18■□□□□ 0.34
MMP28Q9H239 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC17.18■□□□□ 0.34
MMP28Q9H239 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
MMP28Q9H239 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
MMP28Q9H239 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MMP28Q9H239 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MMP28Q9H239 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
MMP28Q9H239 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MMP28Q9H239 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
MMP28Q9H239 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
MMP28Q9H239 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.18■□□□□ 0.34
MMP28Q9H239 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MMP28Q9H239 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MMP28Q9H239 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MMP28Q9H239 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
MMP28Q9H239 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.18■□□□□ 0.34
MMP28Q9H239 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
MMP28Q9H239 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MMP28Q9H239 NOC2LP2-201ENST00000407594 1944 ntBASIC17.17■□□□□ 0.34
MMP28Q9H239 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
MMP28Q9H239 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MMP28Q9H239 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
MMP28Q9H239 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
MMP28Q9H239 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.17■□□□□ 0.34
MMP28Q9H239 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
MMP28Q9H239 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.17■□□□□ 0.34
MMP28Q9H239 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MMP28Q9H239 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
MMP28Q9H239 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
MMP28Q9H239 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.17■□□□□ 0.34
MMP28Q9H239 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.17■□□□□ 0.34
MMP28Q9H239 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MMP28Q9H239 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
MMP28Q9H239 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
MMP28Q9H239 COX20-201ENST00000366528 568 ntTSL 2 BASIC17.17■□□□□ 0.34
MMP28Q9H239 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC17.17■□□□□ 0.34
MMP28Q9H239 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.17■□□□□ 0.34
MMP28Q9H239 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC17.17■□□□□ 0.34
MMP28Q9H239 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC17.17■□□□□ 0.34
MMP28Q9H239 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC17.17■□□□□ 0.34
MMP28Q9H239 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MMP28Q9H239 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MMP28Q9H239 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MMP28Q9H239 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MMP28Q9H239 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC17.17■□□□□ 0.34
MMP28Q9H239 AC139713.2-201ENST00000641328 2723 ntBASIC17.17■□□□□ 0.34
MMP28Q9H239 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms