Protein–RNA interactions for Protein: Q9BRK5

SDF4, 45 kDa calcium-binding protein, humanhuman

Predictions only

Length 362 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4Q9BRK5 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
SDF4Q9BRK5 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC22.67■■□□□ 1.22
SDF4Q9BRK5 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC22.67■■□□□ 1.22
SDF4Q9BRK5 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC22.67■■□□□ 1.22
SDF4Q9BRK5 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC22.67■■□□□ 1.22
SDF4Q9BRK5 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
SDF4Q9BRK5 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC22.67■■□□□ 1.22
SDF4Q9BRK5 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
SDF4Q9BRK5 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC22.67■■□□□ 1.22
SDF4Q9BRK5 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC22.67■■□□□ 1.22
SDF4Q9BRK5 RN7SL471P-201ENST00000580476 299 ntBASIC22.67■■□□□ 1.22
SDF4Q9BRK5 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC22.67■■□□□ 1.22
SDF4Q9BRK5 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SDF4Q9BRK5 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SDF4Q9BRK5 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
SDF4Q9BRK5 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
SDF4Q9BRK5 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SDF4Q9BRK5 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SDF4Q9BRK5 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC22.67■■□□□ 1.22
SDF4Q9BRK5 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SDF4Q9BRK5 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC22.67■■□□□ 1.22
SDF4Q9BRK5 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
SDF4Q9BRK5 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
SDF4Q9BRK5 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
SDF4Q9BRK5 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
SDF4Q9BRK5 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SDF4Q9BRK5 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC22.66■■□□□ 1.22
SDF4Q9BRK5 C1QBPP2-201ENST00000528754 825 ntBASIC22.66■■□□□ 1.22
SDF4Q9BRK5 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC22.66■■□□□ 1.22
SDF4Q9BRK5 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC22.66■■□□□ 1.22
SDF4Q9BRK5 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SDF4Q9BRK5 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SDF4Q9BRK5 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC22.66■■□□□ 1.22
SDF4Q9BRK5 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC22.66■■□□□ 1.22
SDF4Q9BRK5 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SDF4Q9BRK5 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
SDF4Q9BRK5 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
SDF4Q9BRK5 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC22.66■■□□□ 1.22
SDF4Q9BRK5 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SDF4Q9BRK5 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SDF4Q9BRK5 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC22.66■■□□□ 1.22
SDF4Q9BRK5 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC22.66■■□□□ 1.22
SDF4Q9BRK5 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC22.66■■□□□ 1.22
SDF4Q9BRK5 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SDF4Q9BRK5 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
SDF4Q9BRK5 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC22.65■■□□□ 1.22
SDF4Q9BRK5 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SDF4Q9BRK5 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SDF4Q9BRK5 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
SDF4Q9BRK5 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
SDF4Q9BRK5 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC22.65■■□□□ 1.22
SDF4Q9BRK5 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SDF4Q9BRK5 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC22.65■■□□□ 1.22
SDF4Q9BRK5 THEM4-205ENST00000489410 643 ntTSL 2 BASIC22.65■■□□□ 1.22
SDF4Q9BRK5 DET1-205ENST00000558413 583 ntTSL 4 BASIC22.65■■□□□ 1.22
SDF4Q9BRK5 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC22.65■■□□□ 1.22
SDF4Q9BRK5 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC22.65■■□□□ 1.22
SDF4Q9BRK5 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
SDF4Q9BRK5 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SDF4Q9BRK5 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SDF4Q9BRK5 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
SDF4Q9BRK5 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC22.65■■□□□ 1.22
SDF4Q9BRK5 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SDF4Q9BRK5 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
SDF4Q9BRK5 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC22.64■■□□□ 1.22
SDF4Q9BRK5 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC22.64■■□□□ 1.22
SDF4Q9BRK5 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
SDF4Q9BRK5 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SDF4Q9BRK5 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SDF4Q9BRK5 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SDF4Q9BRK5 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC22.64■■□□□ 1.21
SDF4Q9BRK5 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SDF4Q9BRK5 HES2-206ENST00000489730 730 ntTSL 2 BASIC22.64■■□□□ 1.21
SDF4Q9BRK5 RNF121-214ENST00000533380 870 ntTSL 3 BASIC22.64■■□□□ 1.21
SDF4Q9BRK5 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC22.64■■□□□ 1.21
SDF4Q9BRK5 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SDF4Q9BRK5 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC22.64■■□□□ 1.21
SDF4Q9BRK5 AL359736.2-201ENST00000621992 437 ntBASIC22.64■■□□□ 1.21
SDF4Q9BRK5 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC22.64■■□□□ 1.21
SDF4Q9BRK5 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
SDF4Q9BRK5 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC22.63■■□□□ 1.21
SDF4Q9BRK5 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC22.63■■□□□ 1.21
SDF4Q9BRK5 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC22.63■■□□□ 1.21
SDF4Q9BRK5 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SDF4Q9BRK5 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
SDF4Q9BRK5 HLA-G-202ENST00000376815 851 ntBASIC22.63■■□□□ 1.21
SDF4Q9BRK5 HLA-G-203ENST00000376818 1127 ntBASIC22.63■■□□□ 1.21
SDF4Q9BRK5 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SDF4Q9BRK5 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
SDF4Q9BRK5 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC22.63■■□□□ 1.21
SDF4Q9BRK5 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
SDF4Q9BRK5 RPPH1-201ENST00000516869 333 ntBASIC22.63■■□□□ 1.21
SDF4Q9BRK5 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC22.63■■□□□ 1.21
SDF4Q9BRK5 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC22.63■■□□□ 1.21
SDF4Q9BRK5 FAM197Y4-202ENST00000622692 608 ntBASIC22.63■■□□□ 1.21
SDF4Q9BRK5 AP006294.2-201ENST00000641667 209 ntBASIC22.63■■□□□ 1.21
SDF4Q9BRK5 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
SDF4Q9BRK5 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
SDF4Q9BRK5 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SDF4Q9BRK5 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms