Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC068338.2-201ENST00000563278 1430 ntBASIC17.02■□□□□ 0.31
NKX3-1Q99801 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
NKX3-1Q99801 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.02■□□□□ 0.31
NKX3-1Q99801 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
NKX3-1Q99801 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
NKX3-1Q99801 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
NKX3-1Q99801 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.02■□□□□ 0.31
NKX3-1Q99801 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
NKX3-1Q99801 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
NKX3-1Q99801 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
NKX3-1Q99801 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.01■□□□□ 0.31
NKX3-1Q99801 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
NKX3-1Q99801 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
NKX3-1Q99801 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
NKX3-1Q99801 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
NKX3-1Q99801 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
NKX3-1Q99801 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
NKX3-1Q99801 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
NKX3-1Q99801 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC17.01■□□□□ 0.31
NKX3-1Q99801 MCRIP2P1-201ENST00000394346 511 ntBASIC17.01■□□□□ 0.31
NKX3-1Q99801 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
NKX3-1Q99801 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC17.01■□□□□ 0.31
NKX3-1Q99801 PBX1-209ENST00000485769 834 ntTSL 2 BASIC17.01■□□□□ 0.31
NKX3-1Q99801 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
NKX3-1Q99801 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC17.01■□□□□ 0.31
NKX3-1Q99801 AC105020.6-201ENST00000621523 1217 ntBASIC17.01■□□□□ 0.31
NKX3-1Q99801 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
NKX3-1Q99801 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
NKX3-1Q99801 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
NKX3-1Q99801 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
NKX3-1Q99801 KRT16P6-202ENST00000425692 1426 ntBASIC17.01■□□□□ 0.31
NKX3-1Q99801 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
NKX3-1Q99801 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
NKX3-1Q99801 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC17.01■□□□□ 0.31
NKX3-1Q99801 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
NKX3-1Q99801 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
NKX3-1Q99801 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.01■□□□□ 0.31
NKX3-1Q99801 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
NKX3-1Q99801 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
NKX3-1Q99801 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
NKX3-1Q99801 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
NKX3-1Q99801 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.01■□□□□ 0.31
NKX3-1Q99801 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
NKX3-1Q99801 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
NKX3-1Q99801 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
NKX3-1Q99801 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
NKX3-1Q99801 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
NKX3-1Q99801 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17■□□□□ 0.31
NKX3-1Q99801 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17■□□□□ 0.31
NKX3-1Q99801 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17■□□□□ 0.31
NKX3-1Q99801 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
NKX3-1Q99801 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
NKX3-1Q99801 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
NKX3-1Q99801 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
NKX3-1Q99801 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17■□□□□ 0.31
NKX3-1Q99801 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC17■□□□□ 0.31
NKX3-1Q99801 KRT8P20-201ENST00000423953 1409 ntBASIC17■□□□□ 0.31
NKX3-1Q99801 AC006015.1-201ENST00000429970 570 ntBASIC17■□□□□ 0.31
NKX3-1Q99801 AC007322.4-201ENST00000509611 723 ntBASIC17■□□□□ 0.31
NKX3-1Q99801 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17■□□□□ 0.31
NKX3-1Q99801 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17■□□□□ 0.31
NKX3-1Q99801 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17■□□□□ 0.31
NKX3-1Q99801 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
NKX3-1Q99801 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
NKX3-1Q99801 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
NKX3-1Q99801 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
NKX3-1Q99801 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
NKX3-1Q99801 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
NKX3-1Q99801 GCK-205ENST00000437084 1385 ntTSL 5 BASIC17■□□□□ 0.31
NKX3-1Q99801 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17■□□□□ 0.31
NKX3-1Q99801 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
NKX3-1Q99801 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
NKX3-1Q99801 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC16.99■□□□□ 0.31
NKX3-1Q99801 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
NKX3-1Q99801 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
NKX3-1Q99801 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
NKX3-1Q99801 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
NKX3-1Q99801 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
NKX3-1Q99801 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
NKX3-1Q99801 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
NKX3-1Q99801 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
NKX3-1Q99801 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
NKX3-1Q99801 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC16.99■□□□□ 0.31
NKX3-1Q99801 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
NKX3-1Q99801 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
NKX3-1Q99801 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
NKX3-1Q99801 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC16.99■□□□□ 0.31
NKX3-1Q99801 DUX4L16-201ENST00000555130 1264 ntBASIC16.99■□□□□ 0.31
NKX3-1Q99801 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
NKX3-1Q99801 WWOX-218ENST00000627394 894 ntTSL 5 BASIC16.99■□□□□ 0.31
NKX3-1Q99801 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
NKX3-1Q99801 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
NKX3-1Q99801 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
NKX3-1Q99801 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
NKX3-1Q99801 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
NKX3-1Q99801 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.99■□□□□ 0.31
NKX3-1Q99801 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
NKX3-1Q99801 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
NKX3-1Q99801 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
NKX3-1Q99801 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms