Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC21.2■□□□□ 0.98
LRCH3Q96II8 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC21.2■□□□□ 0.98
LRCH3Q96II8 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC21.2■□□□□ 0.98
LRCH3Q96II8 MIR3180-1-201ENST00000580374 94 ntBASIC21.2■□□□□ 0.98
LRCH3Q96II8 MIR3180-3-201ENST00000584616 94 ntBASIC21.2■□□□□ 0.98
LRCH3Q96II8 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC21.2■□□□□ 0.98
LRCH3Q96II8 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
LRCH3Q96II8 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.2■□□□□ 0.98
LRCH3Q96II8 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
LRCH3Q96II8 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
LRCH3Q96II8 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LRCH3Q96II8 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRCH3Q96II8 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC21.19■□□□□ 0.98
LRCH3Q96II8 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC21.19■□□□□ 0.98
LRCH3Q96II8 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LRCH3Q96II8 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRCH3Q96II8 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LRCH3Q96II8 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.19■□□□□ 0.98
LRCH3Q96II8 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRCH3Q96II8 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRCH3Q96II8 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRCH3Q96II8 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRCH3Q96II8 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC21.19■□□□□ 0.98
LRCH3Q96II8 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC21.19■□□□□ 0.98
LRCH3Q96II8 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC21.19■□□□□ 0.98
LRCH3Q96II8 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
LRCH3Q96II8 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRCH3Q96II8 AL353719.1-201ENST00000566847 864 ntBASIC21.19■□□□□ 0.98
LRCH3Q96II8 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
LRCH3Q96II8 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
LRCH3Q96II8 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
LRCH3Q96II8 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
LRCH3Q96II8 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LRCH3Q96II8 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC21.19■□□□□ 0.98
LRCH3Q96II8 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
LRCH3Q96II8 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRCH3Q96II8 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC21.18■□□□□ 0.98
LRCH3Q96II8 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
LRCH3Q96II8 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRCH3Q96II8 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRCH3Q96II8 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRCH3Q96II8 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRCH3Q96II8 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LRCH3Q96II8 TEX30-205ENST00000376029 959 ntTSL 2 BASIC21.18■□□□□ 0.98
LRCH3Q96II8 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
LRCH3Q96II8 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
LRCH3Q96II8 AC106795.1-205ENST00000512851 1056 ntBASIC21.18■□□□□ 0.98
LRCH3Q96II8 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC21.18■□□□□ 0.98
LRCH3Q96II8 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRCH3Q96II8 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRCH3Q96II8 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC21.18■□□□□ 0.98
LRCH3Q96II8 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LRCH3Q96II8 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRCH3Q96II8 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LRCH3Q96II8 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRCH3Q96II8 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRCH3Q96II8 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LRCH3Q96II8 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRCH3Q96II8 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.18■□□□□ 0.98
LRCH3Q96II8 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRCH3Q96II8 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LRCH3Q96II8 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC21.17■□□□□ 0.98
LRCH3Q96II8 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.17■□□□□ 0.98
LRCH3Q96II8 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRCH3Q96II8 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.17■□□□□ 0.98
LRCH3Q96II8 AL024507.2-201ENST00000606070 2574 ntBASIC21.17■□□□□ 0.98
LRCH3Q96II8 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRCH3Q96II8 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.17■□□□□ 0.98
LRCH3Q96II8 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRCH3Q96II8 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC21.17■□□□□ 0.98
LRCH3Q96II8 FAM220CP-201ENST00000395253 831 ntBASIC21.17■□□□□ 0.98
LRCH3Q96II8 MIR1233-2-201ENST00000408138 82 ntBASIC21.17■□□□□ 0.98
LRCH3Q96II8 MIR1233-1-201ENST00000408722 82 ntBASIC21.17■□□□□ 0.98
LRCH3Q96II8 AC004951.3-201ENST00000418645 1148 ntBASIC21.17■□□□□ 0.98
LRCH3Q96II8 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC21.17■□□□□ 0.98
LRCH3Q96II8 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRCH3Q96II8 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRCH3Q96II8 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRCH3Q96II8 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRCH3Q96II8 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRCH3Q96II8 FBXW4P1-201ENST00000426721 2239 ntBASIC21.17■□□□□ 0.98
LRCH3Q96II8 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.17■□□□□ 0.98
LRCH3Q96II8 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRCH3Q96II8 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRCH3Q96II8 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.16■□□□□ 0.98
LRCH3Q96II8 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
LRCH3Q96II8 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
LRCH3Q96II8 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.16■□□□□ 0.98
LRCH3Q96II8 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRCH3Q96II8 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LRCH3Q96II8 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC21.16■□□□□ 0.98
LRCH3Q96II8 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC21.16■□□□□ 0.98
LRCH3Q96II8 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC21.16■□□□□ 0.98
LRCH3Q96II8 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LRCH3Q96II8 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC21.16■□□□□ 0.98
LRCH3Q96II8 AP002469.2-201ENST00000531724 424 ntBASIC21.16■□□□□ 0.98
LRCH3Q96II8 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC21.16■□□□□ 0.98
LRCH3Q96II8 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRCH3Q96II8 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LRCH3Q96II8 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 10.2 ms