Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP3Q96DZ5 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 AL157384.1-201ENST00000445995 2473 ntBASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 AC073912.3-201ENST00000624414 853 ntBASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP3Q96DZ5 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 AC073314.1-201ENST00000568729 2216 ntBASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 AF186192.3-201ENST00000583427 947 ntBASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP3Q96DZ5 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLIP3Q96DZ5 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLIP3Q96DZ5 SMG8-203ENST00000578922 2178 ntBASIC18.79■□□□□ 0.6
CLIP3Q96DZ5 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CLIP3Q96DZ5 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLIP3Q96DZ5 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLIP3Q96DZ5 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CLIP3Q96DZ5 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CLIP3Q96DZ5 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.79■□□□□ 0.6
CLIP3Q96DZ5 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.79■□□□□ 0.6
CLIP3Q96DZ5 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.79■□□□□ 0.6
CLIP3Q96DZ5 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CLIP3Q96DZ5 REXO1L12P-201ENST00000622156 912 ntBASIC18.79■□□□□ 0.6
CLIP3Q96DZ5 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLIP3Q96DZ5 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLIP3Q96DZ5 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.79■□□□□ 0.6
CLIP3Q96DZ5 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLIP3Q96DZ5 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms