Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SHROOM3Q8TF72 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.96■□□□□ 0.79
SHROOM3Q8TF72 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHROOM3Q8TF72 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SHROOM3Q8TF72 C1QL1P1-201ENST00000568105 661 ntBASIC19.96■□□□□ 0.79
SHROOM3Q8TF72 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.96■□□□□ 0.79
SHROOM3Q8TF72 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
SHROOM3Q8TF72 AP006587.1-201ENST00000534129 1502 ntBASIC19.96■□□□□ 0.79
SHROOM3Q8TF72 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SHROOM3Q8TF72 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.96■□□□□ 0.79
SHROOM3Q8TF72 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.96■□□□□ 0.79
SHROOM3Q8TF72 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHROOM3Q8TF72 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHROOM3Q8TF72 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.96■□□□□ 0.79
SHROOM3Q8TF72 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
SHROOM3Q8TF72 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.95■□□□□ 0.78
SHROOM3Q8TF72 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHROOM3Q8TF72 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
SHROOM3Q8TF72 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
SHROOM3Q8TF72 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHROOM3Q8TF72 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHROOM3Q8TF72 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHROOM3Q8TF72 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.95■□□□□ 0.78
SHROOM3Q8TF72 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.95■□□□□ 0.78
SHROOM3Q8TF72 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SHROOM3Q8TF72 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHROOM3Q8TF72 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.95■□□□□ 0.78
SHROOM3Q8TF72 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SHROOM3Q8TF72 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHROOM3Q8TF72 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 AC133681.1-201ENST00000465482 601 ntBASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 AC073648.6-201ENST00000641589 218 ntBASIC19.94■□□□□ 0.78
SHROOM3Q8TF72 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 KRT18P21-201ENST00000515767 1272 ntBASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 AL359736.2-201ENST00000621992 437 ntBASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 REXO1L12P-201ENST00000622156 912 ntBASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 AC093484.2-201ENST00000580996 2166 ntBASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SHROOM3Q8TF72 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.92■□□□□ 0.78
SHROOM3Q8TF72 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
SHROOM3Q8TF72 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHROOM3Q8TF72 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHROOM3Q8TF72 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.92■□□□□ 0.78
SHROOM3Q8TF72 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHROOM3Q8TF72 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.92■□□□□ 0.78
SHROOM3Q8TF72 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHROOM3Q8TF72 ZNF815P-204ENST00000434898 1737 ntBASIC19.92■□□□□ 0.78
SHROOM3Q8TF72 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHROOM3Q8TF72 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHROOM3Q8TF72 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.92■□□□□ 0.78
SHROOM3Q8TF72 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SHROOM3Q8TF72 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SHROOM3Q8TF72 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.92■□□□□ 0.78
SHROOM3Q8TF72 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SHROOM3Q8TF72 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.91■□□□□ 0.78
SHROOM3Q8TF72 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
SHROOM3Q8TF72 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.91■□□□□ 0.78
SHROOM3Q8TF72 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SHROOM3Q8TF72 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.91■□□□□ 0.78
SHROOM3Q8TF72 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms