Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC23.2■■□□□ 1.3
NKX2-3Q8TAU0 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
NKX2-3Q8TAU0 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC23.2■■□□□ 1.3
NKX2-3Q8TAU0 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
NKX2-3Q8TAU0 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC23.2■■□□□ 1.3
NKX2-3Q8TAU0 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
NKX2-3Q8TAU0 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NKX2-3Q8TAU0 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NKX2-3Q8TAU0 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC23.2■■□□□ 1.3
NKX2-3Q8TAU0 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NKX2-3Q8TAU0 TREX2-204ENST00000370212 861 ntTSL 5 BASIC23.2■■□□□ 1.3
NKX2-3Q8TAU0 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
NKX2-3Q8TAU0 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
NKX2-3Q8TAU0 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC23.2■■□□□ 1.3
NKX2-3Q8TAU0 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC23.2■■□□□ 1.3
NKX2-3Q8TAU0 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.2■■□□□ 1.3
NKX2-3Q8TAU0 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NKX2-3Q8TAU0 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NKX2-3Q8TAU0 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
NKX2-3Q8TAU0 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
NKX2-3Q8TAU0 GOLGA6L3-201ENST00000507199 1679 ntBASIC23.19■■□□□ 1.3
NKX2-3Q8TAU0 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC23.19■■□□□ 1.3
NKX2-3Q8TAU0 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
NKX2-3Q8TAU0 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC23.19■■□□□ 1.3
NKX2-3Q8TAU0 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC23.19■■□□□ 1.3
NKX2-3Q8TAU0 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
NKX2-3Q8TAU0 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC23.19■■□□□ 1.3
NKX2-3Q8TAU0 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
NKX2-3Q8TAU0 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
NKX2-3Q8TAU0 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
NKX2-3Q8TAU0 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
NKX2-3Q8TAU0 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
NKX2-3Q8TAU0 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC23.19■■□□□ 1.3
NKX2-3Q8TAU0 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC23.19■■□□□ 1.3
NKX2-3Q8TAU0 SLC25A24-204ENST00000569674 2357 ntBASIC23.19■■□□□ 1.3
NKX2-3Q8TAU0 TMEM179-206ENST00000616017 1645 ntBASIC23.19■■□□□ 1.3
NKX2-3Q8TAU0 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC23.18■■□□□ 1.3
NKX2-3Q8TAU0 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC23.18■■□□□ 1.3
NKX2-3Q8TAU0 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
NKX2-3Q8TAU0 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
NKX2-3Q8TAU0 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
NKX2-3Q8TAU0 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
NKX2-3Q8TAU0 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
NKX2-3Q8TAU0 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC23.18■■□□□ 1.3
NKX2-3Q8TAU0 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NKX2-3Q8TAU0 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NKX2-3Q8TAU0 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NKX2-3Q8TAU0 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC23.18■■□□□ 1.3
NKX2-3Q8TAU0 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC23.18■■□□□ 1.3
NKX2-3Q8TAU0 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NKX2-3Q8TAU0 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC23.18■■□□□ 1.3
NKX2-3Q8TAU0 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
NKX2-3Q8TAU0 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC23.18■■□□□ 1.3
NKX2-3Q8TAU0 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NKX2-3Q8TAU0 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NKX2-3Q8TAU0 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NKX2-3Q8TAU0 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
NKX2-3Q8TAU0 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NKX2-3Q8TAU0 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC23.17■■□□□ 1.3
NKX2-3Q8TAU0 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
NKX2-3Q8TAU0 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NKX2-3Q8TAU0 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
NKX2-3Q8TAU0 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NKX2-3Q8TAU0 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NKX2-3Q8TAU0 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
NKX2-3Q8TAU0 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NKX2-3Q8TAU0 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NKX2-3Q8TAU0 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NKX2-3Q8TAU0 WDR88-203ENST00000592765 651 ntTSL 5 BASIC23.17■■□□□ 1.3
NKX2-3Q8TAU0 MIR6786-201ENST00000616843 113 ntBASIC23.17■■□□□ 1.3
NKX2-3Q8TAU0 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NKX2-3Q8TAU0 AP001271.2-201ENST00000624018 1556 ntBASIC23.17■■□□□ 1.3
NKX2-3Q8TAU0 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NKX2-3Q8TAU0 TREX1-205ENST00000625293 1783 ntBASIC23.17■■□□□ 1.3
NKX2-3Q8TAU0 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 GOLGA2P11-201ENST00000562660 1621 ntBASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 AP006587.1-201ENST00000534129 1502 ntBASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
NKX2-3Q8TAU0 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
NKX2-3Q8TAU0 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
NKX2-3Q8TAU0 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms