Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC21.17■□□□□ 0.98
VPS52Q8N1B4 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VPS52Q8N1B4 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS52Q8N1B4 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VPS52Q8N1B4 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS52Q8N1B4 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
VPS52Q8N1B4 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
VPS52Q8N1B4 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS52Q8N1B4 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS52Q8N1B4 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS52Q8N1B4 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS52Q8N1B4 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.17■□□□□ 0.98
VPS52Q8N1B4 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS52Q8N1B4 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 AC005521.1-201ENST00000393351 872 ntBASIC21.16■□□□□ 0.98
VPS52Q8N1B4 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 FITM1-202ENST00000559294 800 ntBASIC21.16■□□□□ 0.98
VPS52Q8N1B4 NAPSB-206ENST00000562112 1266 ntBASIC21.16■□□□□ 0.98
VPS52Q8N1B4 AL049597.2-201ENST00000565575 961 ntBASIC21.16■□□□□ 0.98
VPS52Q8N1B4 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.16■□□□□ 0.98
VPS52Q8N1B4 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
VPS52Q8N1B4 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS52Q8N1B4 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS52Q8N1B4 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS52Q8N1B4 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC21.15■□□□□ 0.98
VPS52Q8N1B4 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VPS52Q8N1B4 CYP2D8P-201ENST00000433633 1490 ntBASIC21.15■□□□□ 0.98
VPS52Q8N1B4 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS52Q8N1B4 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS52Q8N1B4 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS52Q8N1B4 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS52Q8N1B4 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
VPS52Q8N1B4 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS52Q8N1B4 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC21.15■□□□□ 0.98
VPS52Q8N1B4 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS52Q8N1B4 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC21.15■□□□□ 0.98
VPS52Q8N1B4 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC21.15■□□□□ 0.98
VPS52Q8N1B4 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS52Q8N1B4 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC21.15■□□□□ 0.98
VPS52Q8N1B4 CBFB-203ENST00000561924 584 ntTSL 5 BASIC21.15■□□□□ 0.98
VPS52Q8N1B4 RNF165-205ENST00000588679 2904 ntBASIC21.15■□□□□ 0.98
VPS52Q8N1B4 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
VPS52Q8N1B4 FP700111.2-201ENST00000619190 1892 ntBASIC21.15■□□□□ 0.98
VPS52Q8N1B4 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS52Q8N1B4 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VPS52Q8N1B4 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
VPS52Q8N1B4 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VPS52Q8N1B4 AP005212.1-201ENST00000581547 1997 ntBASIC21.14■□□□□ 0.98
VPS52Q8N1B4 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC21.14■□□□□ 0.97
VPS52Q8N1B4 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS52Q8N1B4 ARMC10P1-201ENST00000313754 855 ntBASIC21.14■□□□□ 0.97
VPS52Q8N1B4 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC21.14■□□□□ 0.97
VPS52Q8N1B4 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VPS52Q8N1B4 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
VPS52Q8N1B4 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS52Q8N1B4 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC21.14■□□□□ 0.97
VPS52Q8N1B4 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC21.14■□□□□ 0.97
VPS52Q8N1B4 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.14■□□□□ 0.97
VPS52Q8N1B4 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC21.14■□□□□ 0.97
VPS52Q8N1B4 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
VPS52Q8N1B4 AP006587.1-201ENST00000534129 1502 ntBASIC21.14■□□□□ 0.97
VPS52Q8N1B4 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.97
VPS52Q8N1B4 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS52Q8N1B4 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS52Q8N1B4 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.13■□□□□ 0.97
VPS52Q8N1B4 AC007225.1-201ENST00000566331 1836 ntBASIC21.13■□□□□ 0.97
VPS52Q8N1B4 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS52Q8N1B4 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS52Q8N1B4 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
VPS52Q8N1B4 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.13■□□□□ 0.97
VPS52Q8N1B4 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC21.13■□□□□ 0.97
VPS52Q8N1B4 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC21.13■□□□□ 0.97
VPS52Q8N1B4 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VPS52Q8N1B4 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS52Q8N1B4 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS52Q8N1B4 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms