Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 ETFA-216ENST00000560726 942 ntTSL 3 BASIC16.14■□□□□ 0.18
CSPG4Q6UVK1 KLK8-205ENST00000593490 267 ntTSL 3 BASIC16.14■□□□□ 0.18
CSPG4Q6UVK1 IRF5-214ENST00000613821 595 ntTSL 5 BASIC16.14■□□□□ 0.18
CSPG4Q6UVK1 AC093458.2-201ENST00000623150 629 ntBASIC16.14■□□□□ 0.18
CSPG4Q6UVK1 AC010653.2-201ENST00000623505 997 ntBASIC16.14■□□□□ 0.18
CSPG4Q6UVK1 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
CSPG4Q6UVK1 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC16.14■□□□□ 0.17
CSPG4Q6UVK1 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CSPG4Q6UVK1 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CSPG4Q6UVK1 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CSPG4Q6UVK1 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CSPG4Q6UVK1 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CSPG4Q6UVK1 DAP-202ENST00000432074 1048 ntTSL 2 BASIC16.14■□□□□ 0.17
CSPG4Q6UVK1 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.14■□□□□ 0.17
CSPG4Q6UVK1 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.14■□□□□ 0.17
CSPG4Q6UVK1 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC16.14■□□□□ 0.17
CSPG4Q6UVK1 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CSPG4Q6UVK1 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC16.14■□□□□ 0.17
CSPG4Q6UVK1 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CSPG4Q6UVK1 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
CSPG4Q6UVK1 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 CCR12P-201ENST00000446203 998 ntBASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 AL023973.1-201ENST00000624619 620 ntBASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 BID-212ENST00000614949 1988 ntTSL 5 BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 AC128688.1-201ENST00000487626 519 ntBASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 AC140113.3-201ENST00000605663 199 ntBASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CSPG4Q6UVK1 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 FP700111.2-201ENST00000619190 1892 ntBASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 KRT8P20-201ENST00000423953 1409 ntBASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 HOMER2P1-201ENST00000455653 964 ntBASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CSPG4Q6UVK1 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 IER3-202ENST00000376377 1350 ntBASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 SLC25A1P2-201ENST00000430693 912 ntBASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 AC139530.3-201ENST00000620344 690 ntBASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 ERF-202ENST00000440177 2032 ntTSL 2 BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms