Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.49■□□□□ 0.87
RNF43Q68DV7 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF43Q68DV7 AC124283.5-201ENST00000624661 1809 ntBASIC20.49■□□□□ 0.87
RNF43Q68DV7 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF43Q68DV7 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF43Q68DV7 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF43Q68DV7 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF43Q68DV7 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF43Q68DV7 TSPY7P-201ENST00000431358 1114 ntBASIC20.49■□□□□ 0.87
RNF43Q68DV7 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF43Q68DV7 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.49■□□□□ 0.87
RNF43Q68DV7 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
RNF43Q68DV7 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
RNF43Q68DV7 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.49■□□□□ 0.87
RNF43Q68DV7 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF43Q68DV7 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
RNF43Q68DV7 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF43Q68DV7 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF43Q68DV7 AC092720.2-201ENST00000602388 1665 ntBASIC20.48■□□□□ 0.87
RNF43Q68DV7 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF43Q68DV7 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.48■□□□□ 0.87
RNF43Q68DV7 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF43Q68DV7 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF43Q68DV7 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF43Q68DV7 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.48■□□□□ 0.87
RNF43Q68DV7 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.48■□□□□ 0.87
RNF43Q68DV7 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
RNF43Q68DV7 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RNF43Q68DV7 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF43Q68DV7 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF43Q68DV7 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF43Q68DV7 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF43Q68DV7 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF43Q68DV7 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.48■□□□□ 0.87
RNF43Q68DV7 AC233702.5-201ENST00000584107 538 ntBASIC20.48■□□□□ 0.87
RNF43Q68DV7 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF43Q68DV7 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RNF43Q68DV7 AL023875.1-201ENST00000640777 796 ntBASIC20.48■□□□□ 0.87
RNF43Q68DV7 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF43Q68DV7 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF43Q68DV7 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.48■□□□□ 0.87
RNF43Q68DV7 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF43Q68DV7 DPP3P2-201ENST00000416030 1696 ntBASIC20.48■□□□□ 0.87
RNF43Q68DV7 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF43Q68DV7 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF43Q68DV7 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RNF43Q68DV7 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.47■□□□□ 0.87
RNF43Q68DV7 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.47■□□□□ 0.87
RNF43Q68DV7 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF43Q68DV7 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.47■□□□□ 0.87
RNF43Q68DV7 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RNF43Q68DV7 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
RNF43Q68DV7 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RNF43Q68DV7 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.47■□□□□ 0.87
RNF43Q68DV7 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF43Q68DV7 AC239809.2-201ENST00000415381 517 ntBASIC20.47■□□□□ 0.87
RNF43Q68DV7 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.47■□□□□ 0.87
RNF43Q68DV7 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.47■□□□□ 0.87
RNF43Q68DV7 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.47■□□□□ 0.87
RNF43Q68DV7 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.47■□□□□ 0.87
RNF43Q68DV7 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.47■□□□□ 0.87
RNF43Q68DV7 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
RNF43Q68DV7 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.47■□□□□ 0.87
RNF43Q68DV7 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF43Q68DV7 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RNF43Q68DV7 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF43Q68DV7 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RNF43Q68DV7 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF43Q68DV7 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF43Q68DV7 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RNF43Q68DV7 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.46■□□□□ 0.87
RNF43Q68DV7 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RNF43Q68DV7 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF43Q68DV7 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RNF43Q68DV7 RPS2P55-201ENST00000397318 883 ntBASIC20.46■□□□□ 0.87
RNF43Q68DV7 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RNF43Q68DV7 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF43Q68DV7 AC107956.1-201ENST00000494359 873 ntBASIC20.46■□□□□ 0.87
RNF43Q68DV7 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.46■□□□□ 0.87
RNF43Q68DV7 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.46■□□□□ 0.87
RNF43Q68DV7 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.46■□□□□ 0.87
RNF43Q68DV7 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.46■□□□□ 0.87
RNF43Q68DV7 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.46■□□□□ 0.87
RNF43Q68DV7 AC110285.5-201ENST00000611501 352 ntBASIC20.46■□□□□ 0.87
RNF43Q68DV7 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RNF43Q68DV7 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
RNF43Q68DV7 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RNF43Q68DV7 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.46■□□□□ 0.87
RNF43Q68DV7 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF43Q68DV7 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
RNF43Q68DV7 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF43Q68DV7 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF43Q68DV7 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF43Q68DV7 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
RNF43Q68DV7 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
RNF43Q68DV7 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RNF43Q68DV7 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
RNF43Q68DV7 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.45■□□□□ 0.86
RNF43Q68DV7 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.45■□□□□ 0.86
RNF43Q68DV7 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms