Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLRN1P58418 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLRN1P58418 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC17.46■□□□□ 0.39
CLRN1P58418 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLRN1P58418 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLRN1P58418 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLRN1P58418 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC17.46■□□□□ 0.39
CLRN1P58418 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLRN1P58418 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC17.46■□□□□ 0.39
CLRN1P58418 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.46■□□□□ 0.39
CLRN1P58418 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC17.46■□□□□ 0.39
CLRN1P58418 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.46■□□□□ 0.39
CLRN1P58418 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
CLRN1P58418 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.46■□□□□ 0.39
CLRN1P58418 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLRN1P58418 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLRN1P58418 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CLRN1P58418 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC17.46■□□□□ 0.38
CLRN1P58418 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.38
CLRN1P58418 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CLRN1P58418 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN1P58418 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CLRN1P58418 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
CLRN1P58418 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN1P58418 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN1P58418 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.45■□□□□ 0.38
CLRN1P58418 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.45■□□□□ 0.38
CLRN1P58418 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN1P58418 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CLRN1P58418 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN1P58418 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN1P58418 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN1P58418 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CLRN1P58418 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN1P58418 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
CLRN1P58418 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN1P58418 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC17.45■□□□□ 0.38
CLRN1P58418 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC17.45■□□□□ 0.38
CLRN1P58418 KLF13-207ENST00000560473 489 ntTSL 3 BASIC17.45■□□□□ 0.38
CLRN1P58418 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CLRN1P58418 AC008687.6-201ENST00000596318 630 ntBASIC17.45■□□□□ 0.38
CLRN1P58418 AC120498.8-201ENST00000614275 531 ntBASIC17.45■□□□□ 0.38
CLRN1P58418 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN1P58418 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN1P58418 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN1P58418 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.45■□□□□ 0.38
CLRN1P58418 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN1P58418 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CLRN1P58418 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN1P58418 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.45■□□□□ 0.38
CLRN1P58418 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN1P58418 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.45■□□□□ 0.38
CLRN1P58418 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.44■□□□□ 0.38
CLRN1P58418 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CLRN1P58418 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.44■□□□□ 0.38
CLRN1P58418 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.44■□□□□ 0.38
CLRN1P58418 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN1P58418 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN1P58418 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN1P58418 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN1P58418 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN1P58418 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN1P58418 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN1P58418 POLI-202ENST00000406285 2030 ntTSL 2 BASIC17.44■□□□□ 0.38
CLRN1P58418 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.44■□□□□ 0.38
CLRN1P58418 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN1P58418 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.44■□□□□ 0.38
CLRN1P58418 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN1P58418 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN1P58418 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC17.44■□□□□ 0.38
CLRN1P58418 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC17.44■□□□□ 0.38
CLRN1P58418 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN1P58418 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.44■□□□□ 0.38
CLRN1P58418 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN1P58418 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC17.44■□□□□ 0.38
CLRN1P58418 RNA5SP413-201ENST00000516373 109 ntBASIC17.44■□□□□ 0.38
CLRN1P58418 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
CLRN1P58418 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
CLRN1P58418 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN1P58418 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC17.44■□□□□ 0.38
CLRN1P58418 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC17.44■□□□□ 0.38
CLRN1P58418 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN1P58418 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
CLRN1P58418 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN1P58418 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN1P58418 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CLRN1P58418 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN1P58418 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.44■□□□□ 0.38
CLRN1P58418 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN1P58418 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CLRN1P58418 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN1P58418 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLRN1P58418 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLRN1P58418 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLRN1P58418 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLRN1P58418 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLRN1P58418 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLRN1P58418 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
CLRN1P58418 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLRN1P58418 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms