Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.53■□□□□ 0.72
CXCL12P48061 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CXCL12P48061 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.53■□□□□ 0.72
CXCL12P48061 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.53■□□□□ 0.72
CXCL12P48061 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CXCL12P48061 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CXCL12P48061 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.53■□□□□ 0.72
CXCL12P48061 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.53■□□□□ 0.72
CXCL12P48061 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CXCL12P48061 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CXCL12P48061 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.52■□□□□ 0.72
CXCL12P48061 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC19.52■□□□□ 0.72
CXCL12P48061 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.52■□□□□ 0.72
CXCL12P48061 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CXCL12P48061 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CXCL12P48061 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.52■□□□□ 0.72
CXCL12P48061 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CXCL12P48061 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.52■□□□□ 0.72
CXCL12P48061 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CXCL12P48061 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CXCL12P48061 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.52■□□□□ 0.72
CXCL12P48061 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC19.52■□□□□ 0.72
CXCL12P48061 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC19.52■□□□□ 0.72
CXCL12P48061 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
CXCL12P48061 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CXCL12P48061 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CXCL12P48061 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CXCL12P48061 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CXCL12P48061 FEM1AP4-201ENST00000443167 1987 ntBASIC19.52■□□□□ 0.71
CXCL12P48061 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.52■□□□□ 0.71
CXCL12P48061 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
CXCL12P48061 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CXCL12P48061 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CXCL12P48061 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CXCL12P48061 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CXCL12P48061 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CXCL12P48061 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CXCL12P48061 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.51■□□□□ 0.71
CXCL12P48061 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CXCL12P48061 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.51■□□□□ 0.71
CXCL12P48061 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CXCL12P48061 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.51■□□□□ 0.71
CXCL12P48061 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC19.51■□□□□ 0.71
CXCL12P48061 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC19.51■□□□□ 0.71
CXCL12P48061 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.51■□□□□ 0.71
CXCL12P48061 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.51■□□□□ 0.71
CXCL12P48061 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.51■□□□□ 0.71
CXCL12P48061 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.51■□□□□ 0.71
CXCL12P48061 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CXCL12P48061 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.51■□□□□ 0.71
CXCL12P48061 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.5■□□□□ 0.71
CXCL12P48061 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CXCL12P48061 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CXCL12P48061 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CXCL12P48061 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.5■□□□□ 0.71
CXCL12P48061 AC112907.2-201ENST00000448639 330 ntBASIC19.5■□□□□ 0.71
CXCL12P48061 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.5■□□□□ 0.71
CXCL12P48061 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.5■□□□□ 0.71
CXCL12P48061 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC19.5■□□□□ 0.71
CXCL12P48061 ZNF444P1-201ENST00000559497 298 ntBASIC19.5■□□□□ 0.71
CXCL12P48061 CKBP1-201ENST00000565489 1086 ntBASIC19.5■□□□□ 0.71
CXCL12P48061 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19.5■□□□□ 0.71
CXCL12P48061 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CXCL12P48061 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CXCL12P48061 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CXCL12P48061 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CXCL12P48061 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CXCL12P48061 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CXCL12P48061 KRT8P45-201ENST00000414328 1447 ntBASIC19.5■□□□□ 0.71
CXCL12P48061 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CXCL12P48061 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CXCL12P48061 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.5■□□□□ 0.71
CXCL12P48061 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.5■□□□□ 0.71
CXCL12P48061 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CXCL12P48061 AC006128.1-201ENST00000624704 1661 ntBASIC19.49■□□□□ 0.71
CXCL12P48061 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CXCL12P48061 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CXCL12P48061 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CXCL12P48061 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CXCL12P48061 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CXCL12P48061 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.49■□□□□ 0.71
CXCL12P48061 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CXCL12P48061 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
CXCL12P48061 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.49■□□□□ 0.71
CXCL12P48061 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.49■□□□□ 0.71
CXCL12P48061 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.49■□□□□ 0.71
CXCL12P48061 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC19.49■□□□□ 0.71
CXCL12P48061 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CXCL12P48061 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC19.49■□□□□ 0.71
CXCL12P48061 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.49■□□□□ 0.71
CXCL12P48061 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CXCL12P48061 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
CXCL12P48061 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CXCL12P48061 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.49■□□□□ 0.71
CXCL12P48061 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CXCL12P48061 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.49■□□□□ 0.71
CXCL12P48061 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CXCL12P48061 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CXCL12P48061 AC007225.1-201ENST00000566331 1836 ntBASIC19.48■□□□□ 0.71
CXCL12P48061 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms