Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL8A1P27658 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL8A1P27658 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL8A1P27658 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
COL8A1P27658 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL8A1P27658 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL8A1P27658 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL8A1P27658 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL8A1P27658 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC17.1■□□□□ 0.33
COL8A1P27658 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL8A1P27658 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL8A1P27658 AL022342.1-201ENST00000400363 863 ntBASIC17.1■□□□□ 0.33
COL8A1P27658 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
COL8A1P27658 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL8A1P27658 AC112907.2-201ENST00000448639 330 ntBASIC17.1■□□□□ 0.33
COL8A1P27658 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.1■□□□□ 0.33
COL8A1P27658 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.1■□□□□ 0.33
COL8A1P27658 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.1■□□□□ 0.33
COL8A1P27658 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
COL8A1P27658 MIR3652-201ENST00000579335 131 ntBASIC17.1■□□□□ 0.33
COL8A1P27658 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.1■□□□□ 0.33
COL8A1P27658 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL8A1P27658 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL8A1P27658 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL8A1P27658 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL8A1P27658 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL8A1P27658 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL8A1P27658 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
COL8A1P27658 ECEL1P1-201ENST00000373592 1742 ntBASIC17.1■□□□□ 0.33
COL8A1P27658 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL8A1P27658 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL8A1P27658 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
COL8A1P27658 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL8A1P27658 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL8A1P27658 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL8A1P27658 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL8A1P27658 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL8A1P27658 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL8A1P27658 AC009078.2-202ENST00000463353 338 ntBASIC17.09■□□□□ 0.33
COL8A1P27658 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.09■□□□□ 0.33
COL8A1P27658 CKBP1-201ENST00000565489 1086 ntBASIC17.09■□□□□ 0.33
COL8A1P27658 AC083849.1-201ENST00000615227 514 ntBASIC17.09■□□□□ 0.33
COL8A1P27658 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL8A1P27658 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
COL8A1P27658 STK25-204ENST00000405585 1643 ntTSL 2 BASIC17.09■□□□□ 0.33
COL8A1P27658 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL8A1P27658 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL8A1P27658 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.09■□□□□ 0.33
COL8A1P27658 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
COL8A1P27658 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
COL8A1P27658 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL8A1P27658 EFS-203ENST00000429593 2610 ntTSL 2 BASIC17.08■□□□□ 0.33
COL8A1P27658 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
COL8A1P27658 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
COL8A1P27658 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC17.08■□□□□ 0.33
COL8A1P27658 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.08■□□□□ 0.32
COL8A1P27658 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL8A1P27658 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL8A1P27658 KRT17P6-201ENST00000453795 1220 ntBASIC17.08■□□□□ 0.32
COL8A1P27658 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC17.08■□□□□ 0.32
COL8A1P27658 ZNF444P1-201ENST00000559497 298 ntBASIC17.08■□□□□ 0.32
COL8A1P27658 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
COL8A1P27658 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
COL8A1P27658 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.08■□□□□ 0.32
COL8A1P27658 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.08■□□□□ 0.32
COL8A1P27658 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL8A1P27658 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL8A1P27658 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL8A1P27658 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL8A1P27658 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL8A1P27658 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL8A1P27658 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL8A1P27658 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC17.08■□□□□ 0.32
COL8A1P27658 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC17.07■□□□□ 0.32
COL8A1P27658 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL8A1P27658 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC17.07■□□□□ 0.32
COL8A1P27658 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.07■□□□□ 0.32
COL8A1P27658 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.07■□□□□ 0.32
COL8A1P27658 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL8A1P27658 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL8A1P27658 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
COL8A1P27658 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL8A1P27658 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL8A1P27658 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL8A1P27658 AC004951.3-201ENST00000418645 1148 ntBASIC17.07■□□□□ 0.32
COL8A1P27658 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL8A1P27658 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.07■□□□□ 0.32
COL8A1P27658 AC111152.3-201ENST00000569699 673 ntBASIC17.07■□□□□ 0.32
COL8A1P27658 LSR-203ENST00000360798 1963 ntTSL 2 BASIC17.07■□□□□ 0.32
COL8A1P27658 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC17.07■□□□□ 0.32
COL8A1P27658 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
COL8A1P27658 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL8A1P27658 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
COL8A1P27658 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL8A1P27658 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
COL8A1P27658 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL8A1P27658 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL8A1P27658 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL8A1P27658 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.06■□□□□ 0.32
COL8A1P27658 AC096733.2-201ENST00000609937 1394 ntBASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms