Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
SNX3O60493 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.27■□□□□ 0.67
SNX3O60493 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SNX3O60493 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
SNX3O60493 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
SNX3O60493 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SNX3O60493 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SNX3O60493 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.27■□□□□ 0.67
SNX3O60493 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SNX3O60493 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.26■□□□□ 0.67
SNX3O60493 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SNX3O60493 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SNX3O60493 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SNX3O60493 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SNX3O60493 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
SNX3O60493 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SNX3O60493 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.26■□□□□ 0.67
SNX3O60493 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.26■□□□□ 0.67
SNX3O60493 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SNX3O60493 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SNX3O60493 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.26■□□□□ 0.67
SNX3O60493 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.26■□□□□ 0.67
SNX3O60493 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SNX3O60493 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SNX3O60493 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SNX3O60493 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC19.26■□□□□ 0.67
SNX3O60493 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SNX3O60493 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
SNX3O60493 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SNX3O60493 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.25■□□□□ 0.67
SNX3O60493 AL512353.2-201ENST00000448759 1962 ntBASIC19.25■□□□□ 0.67
SNX3O60493 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SNX3O60493 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SNX3O60493 PGM5P4-201ENST00000421970 445 ntBASIC19.25■□□□□ 0.67
SNX3O60493 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SNX3O60493 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.25■□□□□ 0.67
SNX3O60493 AL355001.2-201ENST00000620617 1191 ntBASIC19.25■□□□□ 0.67
SNX3O60493 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SNX3O60493 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SNX3O60493 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SNX3O60493 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SNX3O60493 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
SNX3O60493 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
SNX3O60493 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SNX3O60493 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SNX3O60493 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SNX3O60493 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
SNX3O60493 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SNX3O60493 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
SNX3O60493 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SNX3O60493 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SNX3O60493 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.24■□□□□ 0.67
SNX3O60493 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SNX3O60493 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.24■□□□□ 0.67
SNX3O60493 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SNX3O60493 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SNX3O60493 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SNX3O60493 AC079140.4-201ENST00000507448 529 ntBASIC19.24■□□□□ 0.67
SNX3O60493 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC19.24■□□□□ 0.67
SNX3O60493 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SNX3O60493 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SNX3O60493 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SNX3O60493 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SNX3O60493 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SNX3O60493 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SNX3O60493 AC087633.2-202ENST00000565166 1439 ntBASIC19.24■□□□□ 0.67
SNX3O60493 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SNX3O60493 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SNX3O60493 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.24■□□□□ 0.67
SNX3O60493 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SNX3O60493 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SNX3O60493 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
SNX3O60493 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
SNX3O60493 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SNX3O60493 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SNX3O60493 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.23■□□□□ 0.67
SNX3O60493 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.23■□□□□ 0.67
SNX3O60493 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SNX3O60493 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SNX3O60493 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SNX3O60493 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SNX3O60493 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SNX3O60493 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.23■□□□□ 0.67
SNX3O60493 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.23■□□□□ 0.67
SNX3O60493 AC105265.2-201ENST00000467189 838 ntBASIC19.23■□□□□ 0.67
SNX3O60493 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SNX3O60493 AC012414.1-201ENST00000556676 535 ntBASIC19.23■□□□□ 0.67
SNX3O60493 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.23■□□□□ 0.67
SNX3O60493 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SNX3O60493 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.23■□□□□ 0.67
SNX3O60493 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC19.23■□□□□ 0.67
SNX3O60493 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.23■□□□□ 0.67
SNX3O60493 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SNX3O60493 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SNX3O60493 RBM17P2-201ENST00000616397 1405 ntBASIC19.23■□□□□ 0.67
SNX3O60493 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SNX3O60493 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SNX3O60493 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.23■□□□□ 0.67
SNX3O60493 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SNX3O60493 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms