Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
PRKNO60260 HTR7P1-201ENST00000538670 1336 ntBASIC18.22■□□□□ 0.51
PRKNO60260 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PRKNO60260 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PRKNO60260 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
PRKNO60260 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.21■□□□□ 0.51
PRKNO60260 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.21■□□□□ 0.51
PRKNO60260 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PRKNO60260 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PRKNO60260 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.21■□□□□ 0.51
PRKNO60260 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PRKNO60260 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.21■□□□□ 0.51
PRKNO60260 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PRKNO60260 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.21■□□□□ 0.51
PRKNO60260 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
PRKNO60260 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.21■□□□□ 0.51
PRKNO60260 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.21■□□□□ 0.51
PRKNO60260 RARRES2P10-201ENST00000564312 460 ntBASIC18.21■□□□□ 0.51
PRKNO60260 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.21■□□□□ 0.51
PRKNO60260 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
PRKNO60260 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PRKNO60260 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
PRKNO60260 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.21■□□□□ 0.51
PRKNO60260 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.21■□□□□ 0.51
PRKNO60260 AL158211.5-201ENST00000623583 2518 ntBASIC18.21■□□□□ 0.51
PRKNO60260 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.21■□□□□ 0.51
PRKNO60260 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
PRKNO60260 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PRKNO60260 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.21■□□□□ 0.51
PRKNO60260 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PRKNO60260 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PRKNO60260 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PRKNO60260 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PRKNO60260 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
PRKNO60260 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
PRKNO60260 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.2■□□□□ 0.5
PRKNO60260 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PRKNO60260 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.2■□□□□ 0.5
PRKNO60260 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PRKNO60260 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
PRKNO60260 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PRKNO60260 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PRKNO60260 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PRKNO60260 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.2■□□□□ 0.5
PRKNO60260 AC233702.5-201ENST00000584107 538 ntBASIC18.2■□□□□ 0.5
PRKNO60260 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.2■□□□□ 0.5
PRKNO60260 AC004264.1-201ENST00000608354 794 ntBASIC18.2■□□□□ 0.5
PRKNO60260 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
PRKNO60260 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PRKNO60260 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.2■□□□□ 0.5
PRKNO60260 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
PRKNO60260 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PRKNO60260 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PRKNO60260 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PRKNO60260 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
PRKNO60260 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PRKNO60260 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PRKNO60260 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PRKNO60260 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.19■□□□□ 0.5
PRKNO60260 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
PRKNO60260 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
PRKNO60260 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PRKNO60260 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
PRKNO60260 MIR718-201ENST00000390190 70 ntBASIC18.19■□□□□ 0.5
PRKNO60260 AC012618.2-201ENST00000428058 849 ntBASIC18.19■□□□□ 0.5
PRKNO60260 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.19■□□□□ 0.5
PRKNO60260 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.19■□□□□ 0.5
PRKNO60260 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PRKNO60260 AP001271.2-201ENST00000624018 1556 ntBASIC18.19■□□□□ 0.5
PRKNO60260 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PRKNO60260 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PRKNO60260 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.19■□□□□ 0.5
PRKNO60260 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.19■□□□□ 0.5
PRKNO60260 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
PRKNO60260 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
PRKNO60260 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PRKNO60260 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.19■□□□□ 0.5
PRKNO60260 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
PRKNO60260 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
PRKNO60260 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PRKNO60260 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PRKNO60260 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PRKNO60260 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PRKNO60260 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PRKNO60260 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
PRKNO60260 YBX1P10-201ENST00000444752 975 ntBASIC18.18■□□□□ 0.5
PRKNO60260 SNORA78-201ENST00000459373 127 ntBASIC18.18■□□□□ 0.5
PRKNO60260 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.18■□□□□ 0.5
PRKNO60260 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.18■□□□□ 0.5
PRKNO60260 AC113410.3-201ENST00000623366 203 ntBASIC18.18■□□□□ 0.5
PRKNO60260 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PRKNO60260 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PRKNO60260 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PRKNO60260 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
PRKNO60260 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PRKNO60260 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PRKNO60260 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
PRKNO60260 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PRKNO60260 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PRKNO60260 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms