Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 AC027601.4-201ENST00000611259 610 ntBASIC18.53■□□□□ 0.56
CACNA1AO00555 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.53■□□□□ 0.56
CACNA1AO00555 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
CACNA1AO00555 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC18.53■□□□□ 0.56
CACNA1AO00555 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1AO00555 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1AO00555 GPX1P2-201ENST00000429271 606 ntBASIC18.53■□□□□ 0.56
CACNA1AO00555 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1AO00555 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1AO00555 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.53■□□□□ 0.56
CACNA1AO00555 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC18.53■□□□□ 0.56
CACNA1AO00555 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC18.53■□□□□ 0.56
CACNA1AO00555 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1AO00555 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CACNA1AO00555 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1AO00555 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CACNA1AO00555 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1AO00555 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.52■□□□□ 0.56
CACNA1AO00555 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1AO00555 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
CACNA1AO00555 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
CACNA1AO00555 TSPY22P-201ENST00000427496 604 ntBASIC18.52■□□□□ 0.56
CACNA1AO00555 AF238378.1-201ENST00000526806 358 ntBASIC18.52■□□□□ 0.56
CACNA1AO00555 AC083906.6-201ENST00000641366 219 ntBASIC18.52■□□□□ 0.56
CACNA1AO00555 AC079781.4-201ENST00000641908 219 ntBASIC18.52■□□□□ 0.56
CACNA1AO00555 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC18.52■□□□□ 0.56
CACNA1AO00555 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1AO00555 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1AO00555 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
CACNA1AO00555 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1AO00555 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CACNA1AO00555 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.52■□□□□ 0.56
CACNA1AO00555 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CACNA1AO00555 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.52■□□□□ 0.55
CACNA1AO00555 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CACNA1AO00555 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
CACNA1AO00555 HLA-F-220ENST00000434407 884 ntBASIC18.52■□□□□ 0.55
CACNA1AO00555 RFPL4AP1-201ENST00000530883 850 ntBASIC18.52■□□□□ 0.55
CACNA1AO00555 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CACNA1AO00555 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CACNA1AO00555 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC18.52■□□□□ 0.55
CACNA1AO00555 AC134684.3-201ENST00000641758 218 ntBASIC18.52■□□□□ 0.55
CACNA1AO00555 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
CACNA1AO00555 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC18.52■□□□□ 0.55
CACNA1AO00555 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CACNA1AO00555 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.52■□□□□ 0.55
CACNA1AO00555 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
CACNA1AO00555 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CACNA1AO00555 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC18.51■□□□□ 0.55
CACNA1AO00555 UPF3AP3-201ENST00000420996 769 ntBASIC18.51■□□□□ 0.55
CACNA1AO00555 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CACNA1AO00555 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.51■□□□□ 0.55
CACNA1AO00555 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CACNA1AO00555 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.51■□□□□ 0.55
CACNA1AO00555 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CACNA1AO00555 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CACNA1AO00555 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CACNA1AO00555 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CACNA1AO00555 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CACNA1AO00555 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CACNA1AO00555 LINC00167-201ENST00000530583 1419 ntBASIC18.51■□□□□ 0.55
CACNA1AO00555 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.5■□□□□ 0.55
CACNA1AO00555 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CACNA1AO00555 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CACNA1AO00555 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
CACNA1AO00555 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CACNA1AO00555 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.5■□□□□ 0.55
CACNA1AO00555 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.5■□□□□ 0.55
CACNA1AO00555 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CACNA1AO00555 LINC00265-3P-201ENST00000447588 903 ntBASIC18.5■□□□□ 0.55
CACNA1AO00555 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.5■□□□□ 0.55
CACNA1AO00555 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.5■□□□□ 0.55
CACNA1AO00555 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.5■□□□□ 0.55
CACNA1AO00555 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CACNA1AO00555 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CACNA1AO00555 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CACNA1AO00555 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CACNA1AO00555 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CACNA1AO00555 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.5■□□□□ 0.55
CACNA1AO00555 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.5■□□□□ 0.55
CACNA1AO00555 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.5■□□□□ 0.55
CACNA1AO00555 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CACNA1AO00555 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.49■□□□□ 0.55
CACNA1AO00555 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
CACNA1AO00555 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CACNA1AO00555 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.49■□□□□ 0.55
CACNA1AO00555 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CACNA1AO00555 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.49■□□□□ 0.55
CACNA1AO00555 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.49■□□□□ 0.55
CACNA1AO00555 AC139887.3-201ENST00000568585 713 ntBASIC18.49■□□□□ 0.55
CACNA1AO00555 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.49■□□□□ 0.55
CACNA1AO00555 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.49■□□□□ 0.55
CACNA1AO00555 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC18.49■□□□□ 0.55
CACNA1AO00555 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CACNA1AO00555 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CACNA1AO00555 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CACNA1AO00555 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CACNA1AO00555 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CACNA1AO00555 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CACNA1AO00555 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms