Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
DKK3Q9UBP4 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.68■□□□□ 0.74
DKK3Q9UBP4 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
DKK3Q9UBP4 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.68■□□□□ 0.74
DKK3Q9UBP4 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.68■□□□□ 0.74
DKK3Q9UBP4 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.68■□□□□ 0.74
DKK3Q9UBP4 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.68■□□□□ 0.74
DKK3Q9UBP4 MIR4785-201ENST00000585005 73 ntBASIC19.68■□□□□ 0.74
DKK3Q9UBP4 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
DKK3Q9UBP4 CD177P1-201ENST00000606252 935 ntBASIC19.68■□□□□ 0.74
DKK3Q9UBP4 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.68■□□□□ 0.74
DKK3Q9UBP4 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.68■□□□□ 0.74
DKK3Q9UBP4 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
DKK3Q9UBP4 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.68■□□□□ 0.74
DKK3Q9UBP4 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
DKK3Q9UBP4 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.67■□□□□ 0.74
DKK3Q9UBP4 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
DKK3Q9UBP4 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.67■□□□□ 0.74
DKK3Q9UBP4 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
DKK3Q9UBP4 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
DKK3Q9UBP4 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
DKK3Q9UBP4 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
DKK3Q9UBP4 TSPY7P-201ENST00000431358 1114 ntBASIC19.67■□□□□ 0.74
DKK3Q9UBP4 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.67■□□□□ 0.74
DKK3Q9UBP4 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.67■□□□□ 0.74
DKK3Q9UBP4 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.67■□□□□ 0.74
DKK3Q9UBP4 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
DKK3Q9UBP4 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.67■□□□□ 0.74
DKK3Q9UBP4 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.67■□□□□ 0.74
DKK3Q9UBP4 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
DKK3Q9UBP4 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
DKK3Q9UBP4 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
DKK3Q9UBP4 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
DKK3Q9UBP4 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
DKK3Q9UBP4 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.67■□□□□ 0.74
DKK3Q9UBP4 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
DKK3Q9UBP4 KRT8P8-201ENST00000434750 1448 ntBASIC19.67■□□□□ 0.74
DKK3Q9UBP4 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 AL445675.2-201ENST00000620291 557 ntBASIC19.66■□□□□ 0.74
DKK3Q9UBP4 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
DKK3Q9UBP4 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
DKK3Q9UBP4 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.65■□□□□ 0.74
DKK3Q9UBP4 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
DKK3Q9UBP4 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
DKK3Q9UBP4 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
DKK3Q9UBP4 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.65■□□□□ 0.74
DKK3Q9UBP4 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
DKK3Q9UBP4 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
DKK3Q9UBP4 FAM197Y1-201ENST00000421178 764 ntBASIC19.65■□□□□ 0.74
DKK3Q9UBP4 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.65■□□□□ 0.74
DKK3Q9UBP4 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
DKK3Q9UBP4 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
DKK3Q9UBP4 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.65■□□□□ 0.74
DKK3Q9UBP4 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.65■□□□□ 0.74
DKK3Q9UBP4 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
DKK3Q9UBP4 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.65■□□□□ 0.74
DKK3Q9UBP4 KRT16P1-201ENST00000399124 1418 ntBASIC19.65■□□□□ 0.74
DKK3Q9UBP4 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.65■□□□□ 0.74
DKK3Q9UBP4 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
DKK3Q9UBP4 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.64■□□□□ 0.74
DKK3Q9UBP4 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
DKK3Q9UBP4 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
DKK3Q9UBP4 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
DKK3Q9UBP4 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
DKK3Q9UBP4 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
DKK3Q9UBP4 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
DKK3Q9UBP4 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.64■□□□□ 0.73
DKK3Q9UBP4 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
DKK3Q9UBP4 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
DKK3Q9UBP4 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
DKK3Q9UBP4 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.64■□□□□ 0.73
DKK3Q9UBP4 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
DKK3Q9UBP4 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
DKK3Q9UBP4 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
DKK3Q9UBP4 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.64■□□□□ 0.73
DKK3Q9UBP4 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms