Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.6■□□□□ 0.89
SMARCAL1Q9NZC9 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMARCAL1Q9NZC9 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMARCAL1Q9NZC9 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SMARCAL1Q9NZC9 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMARCAL1Q9NZC9 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.6■□□□□ 0.89
SMARCAL1Q9NZC9 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
SMARCAL1Q9NZC9 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.6■□□□□ 0.89
SMARCAL1Q9NZC9 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SMARCAL1Q9NZC9 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.6■□□□□ 0.89
SMARCAL1Q9NZC9 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMARCAL1Q9NZC9 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SMARCAL1Q9NZC9 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMARCAL1Q9NZC9 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCAL1Q9NZC9 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
SMARCAL1Q9NZC9 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
SMARCAL1Q9NZC9 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCAL1Q9NZC9 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.59■□□□□ 0.89
SMARCAL1Q9NZC9 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
SMARCAL1Q9NZC9 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCAL1Q9NZC9 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCAL1Q9NZC9 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.59■□□□□ 0.89
SMARCAL1Q9NZC9 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SMARCAL1Q9NZC9 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCAL1Q9NZC9 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SMARCAL1Q9NZC9 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.59■□□□□ 0.89
SMARCAL1Q9NZC9 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCAL1Q9NZC9 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCAL1Q9NZC9 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCAL1Q9NZC9 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCAL1Q9NZC9 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
SMARCAL1Q9NZC9 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.58■□□□□ 0.89
SMARCAL1Q9NZC9 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMARCAL1Q9NZC9 AC005332.8-201ENST00000622750 2735 ntBASIC20.58■□□□□ 0.89
SMARCAL1Q9NZC9 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMARCAL1Q9NZC9 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
SMARCAL1Q9NZC9 PHGDH-210ENST00000641115 1638 ntBASIC20.58■□□□□ 0.89
SMARCAL1Q9NZC9 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMARCAL1Q9NZC9 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.58■□□□□ 0.89
SMARCAL1Q9NZC9 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.58■□□□□ 0.89
SMARCAL1Q9NZC9 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.58■□□□□ 0.89
SMARCAL1Q9NZC9 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.58■□□□□ 0.89
SMARCAL1Q9NZC9 AC022517.1-201ENST00000592429 346 ntBASIC20.58■□□□□ 0.89
SMARCAL1Q9NZC9 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMARCAL1Q9NZC9 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SMARCAL1Q9NZC9 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.58■□□□□ 0.88
SMARCAL1Q9NZC9 AC005082.1-201ENST00000413042 2259 ntBASIC20.58■□□□□ 0.88
SMARCAL1Q9NZC9 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SMARCAL1Q9NZC9 AC009113.1-201ENST00000570267 2443 ntBASIC20.58■□□□□ 0.88
SMARCAL1Q9NZC9 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SMARCAL1Q9NZC9 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
SMARCAL1Q9NZC9 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SMARCAL1Q9NZC9 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SMARCAL1Q9NZC9 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
SMARCAL1Q9NZC9 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SMARCAL1Q9NZC9 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
SMARCAL1Q9NZC9 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
SMARCAL1Q9NZC9 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
SMARCAL1Q9NZC9 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.58■□□□□ 0.88
SMARCAL1Q9NZC9 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
SMARCAL1Q9NZC9 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.58■□□□□ 0.88
SMARCAL1Q9NZC9 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCAL1Q9NZC9 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCAL1Q9NZC9 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCAL1Q9NZC9 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.57■□□□□ 0.88
SMARCAL1Q9NZC9 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCAL1Q9NZC9 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCAL1Q9NZC9 KRT18P11-201ENST00000435214 1283 ntBASIC20.57■□□□□ 0.88
SMARCAL1Q9NZC9 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCAL1Q9NZC9 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCAL1Q9NZC9 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCAL1Q9NZC9 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SMARCAL1Q9NZC9 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCAL1Q9NZC9 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
SMARCAL1Q9NZC9 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCAL1Q9NZC9 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCAL1Q9NZC9 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.56■□□□□ 0.88
SMARCAL1Q9NZC9 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.56■□□□□ 0.88
SMARCAL1Q9NZC9 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCAL1Q9NZC9 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
SMARCAL1Q9NZC9 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCAL1Q9NZC9 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms