Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
CCDC113Q9H0I3 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC21.67■■□□□ 1.06
CCDC113Q9H0I3 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC113Q9H0I3 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC113Q9H0I3 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC113Q9H0I3 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21.67■■□□□ 1.06
CCDC113Q9H0I3 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC113Q9H0I3 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
CCDC113Q9H0I3 KRT16P5-201ENST00000455284 522 ntBASIC21.67■■□□□ 1.06
CCDC113Q9H0I3 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC113Q9H0I3 RPS2P4-201ENST00000476944 856 ntBASIC21.67■■□□□ 1.06
CCDC113Q9H0I3 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC113Q9H0I3 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC113Q9H0I3 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC113Q9H0I3 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC113Q9H0I3 AL391422.3-201ENST00000603791 2761 ntBASIC21.67■■□□□ 1.06
CCDC113Q9H0I3 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC113Q9H0I3 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC113Q9H0I3 AL691432.2-201ENST00000607222 2038 ntBASIC21.67■■□□□ 1.06
CCDC113Q9H0I3 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC113Q9H0I3 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC113Q9H0I3 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.67■■□□□ 1.06
CCDC113Q9H0I3 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 CABP2-204ENST00000636477 941 ntTSL 5 BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC113Q9H0I3 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC113Q9H0I3 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
CCDC113Q9H0I3 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC113Q9H0I3 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC113Q9H0I3 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC113Q9H0I3 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC113Q9H0I3 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC113Q9H0I3 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC21.65■■□□□ 1.06
CCDC113Q9H0I3 RARRES2P10-201ENST00000564312 460 ntBASIC21.65■■□□□ 1.06
CCDC113Q9H0I3 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC113Q9H0I3 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
CCDC113Q9H0I3 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CCDC113Q9H0I3 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC113Q9H0I3 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC21.65■■□□□ 1.06
CCDC113Q9H0I3 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC113Q9H0I3 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC113Q9H0I3 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC113Q9H0I3 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC113Q9H0I3 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC113Q9H0I3 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC113Q9H0I3 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC113Q9H0I3 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC113Q9H0I3 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 RPS2P55-201ENST00000397318 883 ntBASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 AC012618.2-201ENST00000428058 849 ntBASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 AC107956.1-201ENST00000494359 873 ntBASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 REXO2-216ENST00000544196 452 ntTSL 3 BASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 AC233702.5-201ENST00000584107 538 ntBASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 AP006587.1-201ENST00000534129 1502 ntBASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.64■■□□□ 1.05
CCDC113Q9H0I3 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.63■■□□□ 1.05
CCDC113Q9H0I3 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC113Q9H0I3 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC113Q9H0I3 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.63■■□□□ 1.05
CCDC113Q9H0I3 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms