Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
LINC00643Q86TS7 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
LINC00643Q86TS7 ABALON-201ENST00000629058 1903 ntBASIC12.27□□□□□ -0.44
LINC00643Q86TS7 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC12.27□□□□□ -0.44
LINC00643Q86TS7 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
LINC00643Q86TS7 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC12.27□□□□□ -0.44
LINC00643Q86TS7 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC12.27□□□□□ -0.44
LINC00643Q86TS7 CD276-203ENST00000537340 2439 ntTSL 2 BASIC12.27□□□□□ -0.44
LINC00643Q86TS7 AC004687.1-201ENST00000579003 1625 ntBASIC12.27□□□□□ -0.44
LINC00643Q86TS7 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00643Q86TS7 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00643Q86TS7 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC12.27□□□□□ -0.45
LINC00643Q86TS7 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC12.27□□□□□ -0.45
LINC00643Q86TS7 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00643Q86TS7 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00643Q86TS7 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00643Q86TS7 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC12.27□□□□□ -0.45
LINC00643Q86TS7 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
LINC00643Q86TS7 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00643Q86TS7 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00643Q86TS7 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00643Q86TS7 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00643Q86TS7 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC12.27□□□□□ -0.45
LINC00643Q86TS7 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00643Q86TS7 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00643Q86TS7 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00643Q86TS7 TPR-209ENST00000613151 2478 ntTSL 5 BASIC12.27□□□□□ -0.45
LINC00643Q86TS7 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00643Q86TS7 ESPNP-201ENST00000270691 2015 ntBASIC12.27□□□□□ -0.45
LINC00643Q86TS7 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
LINC00643Q86TS7 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00643Q86TS7 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 LINC00896-202ENST00000609602 2128 ntBASIC12.26□□□□□ -0.45
LINC00643Q86TS7 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00643Q86TS7 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 AC073592.3-201ENST00000625118 1834 ntBASIC12.25□□□□□ -0.45
LINC00643Q86TS7 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms