Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 AL691432.2-201ENST00000607222 2038 ntBASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 TERF1P1-201ENST00000311003 1181 ntBASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 AP005242.2-201ENST00000580065 1175 ntBASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 DGCR10-201ENST00000609839 495 ntBASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNFT1Q5M7Z0 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
RNFT1Q5M7Z0 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RNFT1Q5M7Z0 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.65■□□□□ 0.42
RNFT1Q5M7Z0 AC073508.3-201ENST00000619697 1419 ntBASIC17.65■□□□□ 0.42
RNFT1Q5M7Z0 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
RNFT1Q5M7Z0 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
RNFT1Q5M7Z0 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.65■□□□□ 0.42
RNFT1Q5M7Z0 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RNFT1Q5M7Z0 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
RNFT1Q5M7Z0 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
RNFT1Q5M7Z0 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RNFT1Q5M7Z0 SLC25A3P1-201ENST00000443844 931 ntBASIC17.65■□□□□ 0.42
RNFT1Q5M7Z0 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RNFT1Q5M7Z0 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.65■□□□□ 0.42
RNFT1Q5M7Z0 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.65■□□□□ 0.42
RNFT1Q5M7Z0 AL445228.2-201ENST00000605589 952 ntBASIC17.65■□□□□ 0.42
RNFT1Q5M7Z0 FEM1AP1-201ENST00000431297 1995 ntBASIC17.65■□□□□ 0.42
RNFT1Q5M7Z0 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RNFT1Q5M7Z0 AP001271.2-201ENST00000624018 1556 ntBASIC17.65■□□□□ 0.42
RNFT1Q5M7Z0 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RNFT1Q5M7Z0 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
RNFT1Q5M7Z0 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.64■□□□□ 0.42
RNFT1Q5M7Z0 KRT8P8-201ENST00000434750 1448 ntBASIC17.64■□□□□ 0.42
RNFT1Q5M7Z0 AL162377.1-201ENST00000618844 1793 ntBASIC17.64■□□□□ 0.41
RNFT1Q5M7Z0 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNFT1Q5M7Z0 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNFT1Q5M7Z0 INGX-201ENST00000359239 846 ntBASIC17.64■□□□□ 0.41
RNFT1Q5M7Z0 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.64■□□□□ 0.41
RNFT1Q5M7Z0 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC17.64■□□□□ 0.41
RNFT1Q5M7Z0 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.64■□□□□ 0.41
RNFT1Q5M7Z0 AP000692.2-201ENST00000608391 879 ntBASIC17.64■□□□□ 0.41
RNFT1Q5M7Z0 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
RNFT1Q5M7Z0 AC011298.2-201ENST00000617989 482 ntBASIC17.64■□□□□ 0.41
RNFT1Q5M7Z0 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNFT1Q5M7Z0 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC17.64■□□□□ 0.41
RNFT1Q5M7Z0 AC092667.1-201ENST00000434301 2586 ntBASIC17.64■□□□□ 0.41
RNFT1Q5M7Z0 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.64■□□□□ 0.41
RNFT1Q5M7Z0 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNFT1Q5M7Z0 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
RNFT1Q5M7Z0 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC17.63■□□□□ 0.41
RNFT1Q5M7Z0 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RNFT1Q5M7Z0 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNFT1Q5M7Z0 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RNFT1Q5M7Z0 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNFT1Q5M7Z0 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
RNFT1Q5M7Z0 SLC25A1P4-201ENST00000567977 778 ntBASIC17.63■□□□□ 0.41
RNFT1Q5M7Z0 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
RNFT1Q5M7Z0 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.63■□□□□ 0.41
RNFT1Q5M7Z0 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RNFT1Q5M7Z0 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
RNFT1Q5M7Z0 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNFT1Q5M7Z0 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC17.63■□□□□ 0.41
RNFT1Q5M7Z0 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNFT1Q5M7Z0 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNFT1Q5M7Z0 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RNFT1Q5M7Z0 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RNFT1Q5M7Z0 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNFT1Q5M7Z0 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC17.62■□□□□ 0.41
RNFT1Q5M7Z0 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC17.62■□□□□ 0.41
RNFT1Q5M7Z0 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.62■□□□□ 0.41
RNFT1Q5M7Z0 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNFT1Q5M7Z0 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNFT1Q5M7Z0 AC004951.3-201ENST00000418645 1148 ntBASIC17.62■□□□□ 0.41
RNFT1Q5M7Z0 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
RNFT1Q5M7Z0 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.62■□□□□ 0.41
RNFT1Q5M7Z0 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms