Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 RN7SL471P-201ENST00000580476 299 ntBASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PTCHD3Q3KNS1 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 TFP1-202ENST00000475455 1573 ntBASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTCHD3Q3KNS1 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.12■□□□□ 0.65
PTCHD3Q3KNS1 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 RPS2P4-201ENST00000476944 856 ntBASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PTCHD3Q3KNS1 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms