Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 UBAP2L-203ENST00000361546 3864 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.914e-8■□□□□ 11
U2AF1Q01081 EZH2-204ENST00000469631 414 ntTSL 29.56□□□□□ -0.887e-7■□□□□ 10.9
U2AF1Q01081 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC16.05■□□□□ 0.169e-7■□□□□ 10.9
U2AF1Q01081 MKLN1-209ENST00000494785 2386 ntTSL 1 (best)14.84□□□□□ -0.039e-7■□□□□ 10.9
U2AF1Q01081 MKLN1-206ENST00000458153 2448 ntTSL 212.03□□□□□ -0.489e-7■□□□□ 10.9
U2AF1Q01081 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.729e-7■□□□□ 10.9
U2AF1Q01081 AC022167.2-201ENST00000565934 2288 ntTSL 3 BASIC14.1□□□□□ -0.153e-8■□□□□ 10.9
U2AF1Q01081 ANKHD1-207ENST00000421134 4814 ntTSL 523.57■■□□□ 1.362e-8■□□□□ 10.9
U2AF1Q01081 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.662e-8■□□□□ 10.9
U2AF1Q01081 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC18.68■□□□□ 0.582e-8■□□□□ 10.9
U2AF1Q01081 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.312e-8■□□□□ 10.9
U2AF1Q01081 ANKHD1-206ENST00000412116 1826 ntTSL 59.87□□□□□ -0.839e-10■□□□□ 10.9
U2AF1Q01081 ANKHD1-201ENST00000246149 2062 ntTSL 29.06□□□□□ -0.969e-10■□□□□ 10.9
U2AF1Q01081 ANKHD1-218ENST00000506755 522 ntTSL 37.08□□□□□ -1.289e-10■□□□□ 10.9
U2AF1Q01081 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC9.9□□□□□ -0.829e-7■□□□□ 10.9
U2AF1Q01081 PAH-215ENST00000553106 4122 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.324e-7■□□□□ 10.9
U2AF1Q01081 PAH-201ENST00000307000 2466 ntTSL 5 BASIC9.84□□□□□ -0.834e-7■□□□□ 10.9
U2AF1Q01081 PAH-208ENST00000549247 961 ntTSL 28.33□□□□□ -1.084e-7■□□□□ 10.9
U2AF1Q01081 PAH-211ENST00000551114 1109 ntTSL 25.97□□□□□ -1.454e-7■□□□□ 10.9
U2AF1Q01081 PAH-216ENST00000635477 429 ntTSL 55.59□□□□□ -1.514e-7■□□□□ 10.9
U2AF1Q01081 PDHA1-201ENST00000355808 699 ntTSL 320.46■□□□□ 0.872e-9■□□□□ 10.9
U2AF1Q01081 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC17.33■□□□□ 0.362e-9■□□□□ 10.9
U2AF1Q01081 PDHA1-209ENST00000479146 535 ntTSL 217.06■□□□□ 0.322e-9■□□□□ 10.9
U2AF1Q01081 PDHA1-206ENST00000422285 3310 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.272e-9■□□□□ 10.9
U2AF1Q01081 PDHA1-213ENST00000545074 3391 ntAPPRIS ALT1 TSL 2 BASIC16.41■□□□□ 0.222e-9■□□□□ 10.9
U2AF1Q01081 PDHA1-204ENST00000379806 3484 ntTSL 1 (best) BASIC14.6□□□□□ -0.072e-9■□□□□ 10.9
U2AF1Q01081 GDF15-205ENST00000604609 506 ntTSL 313.22□□□□□ -0.299e-13■□□□□ 10.9
U2AF1Q01081 PHYKPL-211ENST00000494126 2297 ntTSL 1 (best)32.57■■■□□ 2.88e-6■□□□□ 10.9
U2AF1Q01081 AC004980.1-202ENST00000450661 962 ntTSL 1 (best)31.99■■■□□ 2.718e-6■□□□□ 10.9
U2AF1Q01081 PHYKPL-204ENST00000474052 1539 ntTSL 1 (best)30.96■■■□□ 2.558e-6■□□□□ 10.9
U2AF1Q01081 AC004980.1-203ENST00000423084 748 ntTSL 330.51■■■□□ 2.478e-6■□□□□ 10.9
U2AF1Q01081 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC28.13■■■□□ 2.098e-6■□□□□ 10.9
U2AF1Q01081 ARIH2-204ENST00000433170 560 ntTSL 426.83■■□□□ 1.898e-6■□□□□ 10.9
U2AF1Q01081 ARIH2-218ENST00000474936 695 ntTSL 226.83■■□□□ 1.898e-6■□□□□ 10.9
U2AF1Q01081 ARIH2-226ENST00000488963 517 ntTSL 326.83■■□□□ 1.898e-6■□□□□ 10.9
U2AF1Q01081 PHYKPL-209ENST00000489262 2780 ntTSL 226.54■■□□□ 1.848e-6■□□□□ 10.9
U2AF1Q01081 AC004980.1-204ENST00000429707 299 ntBASIC25.89■■□□□ 1.748e-6■□□□□ 10.9
U2AF1Q01081 PRKAR1A-215ENST00000588702 622 ntTSL 225.23■■□□□ 1.638e-6■□□□□ 10.9
U2AF1Q01081 PHYKPL-210ENST00000493197 1969 ntTSL 224.79■■□□□ 1.568e-6■□□□□ 10.9
U2AF1Q01081 ARIH2-202ENST00000420814 884 ntTSL 324.56■■□□□ 1.528e-6■□□□□ 10.9
U2AF1Q01081 ARIH2-224ENST00000486316 406 ntTSL 424.56■■□□□ 1.528e-6■□□□□ 10.9
U2AF1Q01081 ARIH2-227ENST00000490095 1001 ntTSL 524.56■■□□□ 1.528e-6■□□□□ 10.9
U2AF1Q01081 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.58e-6■□□□□ 10.9
U2AF1Q01081 PRKAR1A-207ENST00000585608 848 ntTSL 324.2■■□□□ 1.468e-6■□□□□ 10.9
U2AF1Q01081 ARIH2-230ENST00000495761 569 ntTSL 324.1■■□□□ 1.458e-6■□□□□ 10.9
U2AF1Q01081 ARIH2-219ENST00000478224 507 ntTSL 322.7■■□□□ 1.228e-6■□□□□ 10.9
U2AF1Q01081 ARIH2-206ENST00000449729 678 ntTSL 222.08■■□□□ 1.138e-6■□□□□ 10.9
U2AF1Q01081 PRKAR1A-206ENST00000585460 680 ntTSL 221.91■■□□□ 1.18e-6■□□□□ 10.9
U2AF1Q01081 ARIH2-217ENST00000474618 566 ntTSL 321.23■□□□□ 0.998e-6■□□□□ 10.9
U2AF1Q01081 ARIH2-221ENST00000482427 556 ntTSL 421.23■□□□□ 0.998e-6■□□□□ 10.9
U2AF1Q01081 ARIH2-222ENST00000483333 674 ntTSL 521.23■□□□□ 0.998e-6■□□□□ 10.9
U2AF1Q01081 ARIH2-203ENST00000430423 753 ntTSL 221.19■□□□□ 0.988e-6■□□□□ 10.9
U2AF1Q01081 ARIH2-208ENST00000452882 598 ntTSL 321.19■□□□□ 0.988e-6■□□□□ 10.9
U2AF1Q01081 CBX4-204ENST00000495122 490 ntTSL 321.19■□□□□ 0.983e-8■□□□□ 10.9
U2AF1Q01081 ARIH2-231ENST00000498314 649 ntTSL 421.19■□□□□ 0.988e-6■□□□□ 10.9
U2AF1Q01081 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.748e-6■□□□□ 10.9
U2AF1Q01081 PRKAR1A-205ENST00000585427 557 ntTSL 419.38■□□□□ 0.698e-6■□□□□ 10.9
U2AF1Q01081 PHYKPL-206ENST00000476487 2251 ntTSL 219.33■□□□□ 0.688e-6■□□□□ 10.9
U2AF1Q01081 ARIH2-223ENST00000484999 728 ntTSL 518.61■□□□□ 0.578e-6■□□□□ 10.9
U2AF1Q01081 PRKAR1A-220ENST00000592194 556 ntTSL 218.13■□□□□ 0.498e-6■□□□□ 10.9
U2AF1Q01081 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.438e-6■□□□□ 10.9
U2AF1Q01081 PRKAR1A-218ENST00000589309 407 ntTSL 317.56■□□□□ 0.48e-6■□□□□ 10.9
U2AF1Q01081 PHYKPL-207ENST00000481436 2025 ntTSL 217.29■□□□□ 0.368e-6■□□□□ 10.9
U2AF1Q01081 ARIH2-213ENST00000466850 546 ntTSL 216.52■□□□□ 0.248e-6■□□□□ 10.9
U2AF1Q01081 ARIH2-215ENST00000470296 457 ntTSL 1 (best)16.34■□□□□ 0.218e-6■□□□□ 10.9
U2AF1Q01081 PHYKPL-214ENST00000506045 731 ntTSL 516.24■□□□□ 0.198e-6■□□□□ 10.9
U2AF1Q01081 PHYKPL-208ENST00000481811 2709 ntTSL 216.02■□□□□ 0.168e-6■□□□□ 10.9
U2AF1Q01081 AC074091.1-201ENST00000505973 1741 ntTSL 2 BASIC15.74■□□□□ 0.117e-7■□□□□ 10.9
U2AF1Q01081 PRKAR1A-217ENST00000589228 4256 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.088e-6■□□□□ 10.9
U2AF1Q01081 PHYKPL-216ENST00000510991 814 ntTSL 314.95□□□□□ -0.028e-6■□□□□ 10.9
U2AF1Q01081 ARIH2-210ENST00000463204 522 ntTSL 514.08□□□□□ -0.168e-6■□□□□ 10.9
U2AF1Q01081 ARIH2-201ENST00000356401 4933 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.258e-6■□□□□ 10.9
U2AF1Q01081 PRKAR1A-219ENST00000589480 549 ntTSL 213.36□□□□□ -0.278e-6■□□□□ 10.9
U2AF1Q01081 ZNF512-204ENST00000416005 3515 ntTSL 2 BASIC13.17□□□□□ -0.37e-7■□□□□ 10.9
U2AF1Q01081 ARIH2-207ENST00000452385 2778 ntTSL 212.13□□□□□ -0.478e-6■□□□□ 10.9
U2AF1Q01081 ZNF512-202ENST00000379717 3417 ntAPPRIS ALT1 TSL 5 BASIC11.84□□□□□ -0.517e-7■□□□□ 10.9
U2AF1Q01081 PRKAR1A-211ENST00000586397 1940 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.548e-6■□□□□ 10.9
U2AF1Q01081 ZNF512-208ENST00000556601 3543 ntTSL 1 (best) BASIC11.35□□□□□ -0.597e-7■□□□□ 10.9
U2AF1Q01081 PRKAR1A-208ENST00000585815 553 ntTSL 511.18□□□□□ -0.628e-6■□□□□ 10.9
U2AF1Q01081 ZNF512-203ENST00000413371 3703 ntTSL 2 BASIC11.02□□□□□ -0.657e-7■□□□□ 10.9
U2AF1Q01081 PRKAR1A-210ENST00000585981 995 ntTSL 510.99□□□□□ -0.658e-6■□□□□ 10.9
U2AF1Q01081 PHYKPL-215ENST00000510913 643 ntTSL 310.98□□□□□ -0.658e-6■□□□□ 10.9
U2AF1Q01081 ZNF512-201ENST00000355467 3541 ntAPPRIS P2 TSL 2 BASIC10.85□□□□□ -0.677e-7■□□□□ 10.9
U2AF1Q01081 PRKAR1A-202ENST00000392710 3551 ntTSL 29.32□□□□□ -0.928e-6■□□□□ 10.9
U2AF1Q01081 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.988e-6■□□□□ 10.9
U2AF1Q01081 ZNF512-206ENST00000488055 2465 ntTSL 28.37□□□□□ -1.077e-7■□□□□ 10.9
U2AF1Q01081 PRKAR1A-213ENST00000588178 583 ntTSL 46.98□□□□□ -1.298e-6■□□□□ 10.9
U2AF1Q01081 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC24.07■■□□□ 1.442e-8■□□□□ 10.9
U2AF1Q01081 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.292e-8■□□□□ 10.9
U2AF1Q01081 CNNM3-203ENST00000465224 2607 ntTSL 1 (best)12.69□□□□□ -0.382e-8■□□□□ 10.9
U2AF1Q01081 CNNM3-204ENST00000480035 396 ntTSL 57.09□□□□□ -1.272e-8■□□□□ 10.9
U2AF1Q01081 METTL17-211ENST00000554849 915 ntTSL 513.87□□□□□ -0.199e-8■□□□□ 10.9
U2AF1Q01081 METTL17-203ENST00000553389 952 ntTSL 212.95□□□□□ -0.349e-8■□□□□ 10.9
U2AF1Q01081 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC9.24□□□□□ -0.931e-6■□□□□ 10.9
U2AF1Q01081 SEL1L3-209ENST00000513364 611 ntTSL 331.62■■■□□ 2.654e-10■□□□□ 10.8
U2AF1Q01081 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.424e-10■□□□□ 10.8
U2AF1Q01081 NMU-205ENST00000511469 756 ntTSL 3 BASIC24.37■■□□□ 1.497e-8■□□□□ 10.8
U2AF1Q01081 NMU-202ENST00000505262 693 ntTSL 3 BASIC22.77■■□□□ 1.247e-8■□□□□ 10.8
U2AF1Q01081 NMU-203ENST00000507338 658 ntTSL 3 BASIC22.46■■□□□ 1.197e-8■□□□□ 10.8
U2AF1Q01081 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.017e-8■□□□□ 10.8
Retrieved 100 of 10,096 protein–RNA pairs in 41.4 ms