Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.56■■□□□ 1.04
CLCN3P51790 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC21.56■■□□□ 1.04
CLCN3P51790 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC21.56■■□□□ 1.04
CLCN3P51790 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC21.56■■□□□ 1.04
CLCN3P51790 FITM1-202ENST00000559294 800 ntBASIC21.56■■□□□ 1.04
CLCN3P51790 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC21.56■■□□□ 1.04
CLCN3P51790 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC21.56■■□□□ 1.04
CLCN3P51790 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CLCN3P51790 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CLCN3P51790 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CLCN3P51790 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLCN3P51790 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLCN3P51790 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC21.56■■□□□ 1.04
CLCN3P51790 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CLCN3P51790 CYP2D8P-201ENST00000433633 1490 ntBASIC21.56■■□□□ 1.04
CLCN3P51790 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC21.56■■□□□ 1.04
CLCN3P51790 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CLCN3P51790 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLCN3P51790 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLCN3P51790 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CLCN3P51790 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CLCN3P51790 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLCN3P51790 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
CLCN3P51790 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CLCN3P51790 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLCN3P51790 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLCN3P51790 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLCN3P51790 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLCN3P51790 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC21.55■■□□□ 1.04
CLCN3P51790 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLCN3P51790 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
CLCN3P51790 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC21.55■■□□□ 1.04
CLCN3P51790 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC21.55■■□□□ 1.04
CLCN3P51790 GLDC-219ENST00000640208 420 ntTSL 2 BASIC21.55■■□□□ 1.04
CLCN3P51790 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLCN3P51790 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
CLCN3P51790 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.55■■□□□ 1.04
CLCN3P51790 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLCN3P51790 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CLCN3P51790 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
CLCN3P51790 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLCN3P51790 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
CLCN3P51790 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC21.55■■□□□ 1.04
CLCN3P51790 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
CLCN3P51790 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLCN3P51790 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.54■■□□□ 1.04
CLCN3P51790 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLCN3P51790 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
CLCN3P51790 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLCN3P51790 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC21.54■■□□□ 1.04
CLCN3P51790 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLCN3P51790 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLCN3P51790 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLCN3P51790 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLCN3P51790 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC21.54■■□□□ 1.04
CLCN3P51790 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CLCN3P51790 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC21.54■■□□□ 1.04
CLCN3P51790 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.54■■□□□ 1.04
CLCN3P51790 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.54■■□□□ 1.04
CLCN3P51790 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC21.54■■□□□ 1.04
CLCN3P51790 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC21.54■■□□□ 1.04
CLCN3P51790 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC21.54■■□□□ 1.04
CLCN3P51790 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
CLCN3P51790 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLCN3P51790 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.54■■□□□ 1.04
CLCN3P51790 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
CLCN3P51790 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLCN3P51790 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLCN3P51790 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLCN3P51790 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
CLCN3P51790 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.53■■□□□ 1.04
CLCN3P51790 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLCN3P51790 AC009237.14-201ENST00000609975 1594 ntBASIC21.53■■□□□ 1.04
CLCN3P51790 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLCN3P51790 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLCN3P51790 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
CLCN3P51790 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLCN3P51790 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLCN3P51790 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CLCN3P51790 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLCN3P51790 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CLCN3P51790 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC21.53■■□□□ 1.04
CLCN3P51790 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC21.53■■□□□ 1.04
CLCN3P51790 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLCN3P51790 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
CLCN3P51790 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC21.53■■□□□ 1.04
CLCN3P51790 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
CLCN3P51790 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CLCN3P51790 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLCN3P51790 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLCN3P51790 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.52■■□□□ 1.04
CLCN3P51790 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21.52■■□□□ 1.04
CLCN3P51790 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLCN3P51790 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CLCN3P51790 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
CLCN3P51790 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC21.52■■□□□ 1.04
CLCN3P51790 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLCN3P51790 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.52■■□□□ 1.04
CLCN3P51790 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.52■■□□□ 1.04
CLCN3P51790 RCN1P1-201ENST00000400413 996 ntBASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms