Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.88■□□□□ 0.61
COL5A1P20908 AC007225.1-201ENST00000566331 1836 ntBASIC18.88■□□□□ 0.61
COL5A1P20908 AC083849.1-201ENST00000615227 514 ntBASIC18.88■□□□□ 0.61
COL5A1P20908 AC130371.2-201ENST00000619443 611 ntBASIC18.88■□□□□ 0.61
COL5A1P20908 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL5A1P20908 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC18.88■□□□□ 0.61
COL5A1P20908 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
COL5A1P20908 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
COL5A1P20908 TMEM179-206ENST00000616017 1645 ntBASIC18.88■□□□□ 0.61
COL5A1P20908 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.88■□□□□ 0.61
COL5A1P20908 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL5A1P20908 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.88■□□□□ 0.61
COL5A1P20908 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.88■□□□□ 0.61
COL5A1P20908 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL5A1P20908 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
COL5A1P20908 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL5A1P20908 AL512604.3-201ENST00000569583 964 ntBASIC18.88■□□□□ 0.61
COL5A1P20908 AL023803.3-201ENST00000615559 522 ntBASIC18.88■□□□□ 0.61
COL5A1P20908 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL5A1P20908 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL5A1P20908 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL5A1P20908 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A1P20908 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.87■□□□□ 0.61
COL5A1P20908 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.87■□□□□ 0.61
COL5A1P20908 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.87■□□□□ 0.61
COL5A1P20908 AC092338.2-201ENST00000568827 1415 ntBASIC18.87■□□□□ 0.61
COL5A1P20908 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A1P20908 AC092647.4-201ENST00000457211 535 ntBASIC18.87■□□□□ 0.61
COL5A1P20908 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.87■□□□□ 0.61
COL5A1P20908 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A1P20908 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A1P20908 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.87■□□□□ 0.61
COL5A1P20908 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A1P20908 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
COL5A1P20908 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A1P20908 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.87■□□□□ 0.61
COL5A1P20908 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A1P20908 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A1P20908 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A1P20908 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A1P20908 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
COL5A1P20908 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.86■□□□□ 0.61
COL5A1P20908 KRT18P48-201ENST00000434763 852 ntBASIC18.86■□□□□ 0.61
COL5A1P20908 KRT18P56-201ENST00000507275 550 ntBASIC18.86■□□□□ 0.61
COL5A1P20908 FAM86EP-206ENST00000510506 987 ntBASIC18.86■□□□□ 0.61
COL5A1P20908 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.86■□□□□ 0.61
COL5A1P20908 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.86■□□□□ 0.61
COL5A1P20908 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.86■□□□□ 0.61
COL5A1P20908 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A1P20908 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.86■□□□□ 0.61
COL5A1P20908 AL121894.2-201ENST00000602977 491 ntBASIC18.86■□□□□ 0.61
COL5A1P20908 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC18.86■□□□□ 0.61
COL5A1P20908 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.86■□□□□ 0.61
COL5A1P20908 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.86■□□□□ 0.61
COL5A1P20908 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
COL5A1P20908 AP005212.1-201ENST00000581547 1997 ntBASIC18.86■□□□□ 0.61
COL5A1P20908 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A1P20908 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.86■□□□□ 0.61
COL5A1P20908 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A1P20908 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
COL5A1P20908 AC005332.1-201ENST00000577698 1310 ntBASIC18.86■□□□□ 0.61
COL5A1P20908 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A1P20908 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A1P20908 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A1P20908 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A1P20908 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
COL5A1P20908 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A1P20908 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A1P20908 PCED1CP-201ENST00000419887 785 ntBASIC18.86■□□□□ 0.61
COL5A1P20908 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.86■□□□□ 0.61
COL5A1P20908 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC18.86■□□□□ 0.61
COL5A1P20908 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.86■□□□□ 0.61
COL5A1P20908 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.86■□□□□ 0.61
COL5A1P20908 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.86■□□□□ 0.61
COL5A1P20908 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.86■□□□□ 0.61
COL5A1P20908 FP700111.2-201ENST00000619190 1892 ntBASIC18.86■□□□□ 0.61
COL5A1P20908 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL5A1P20908 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL5A1P20908 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
COL5A1P20908 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL5A1P20908 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL5A1P20908 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.85■□□□□ 0.61
COL5A1P20908 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.85■□□□□ 0.61
COL5A1P20908 AC008040.2-201ENST00000461049 708 ntBASIC18.85■□□□□ 0.61
COL5A1P20908 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.85■□□□□ 0.61
COL5A1P20908 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.85■□□□□ 0.61
COL5A1P20908 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
COL5A1P20908 AC069148.1-201ENST00000608741 768 ntBASIC18.85■□□□□ 0.61
COL5A1P20908 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.85■□□□□ 0.61
COL5A1P20908 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.85■□□□□ 0.61
COL5A1P20908 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
COL5A1P20908 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL5A1P20908 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.85■□□□□ 0.61
COL5A1P20908 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL5A1P20908 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL5A1P20908 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC18.84■□□□□ 0.61
COL5A1P20908 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.84■□□□□ 0.61
COL5A1P20908 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.84■□□□□ 0.61
COL5A1P20908 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.84■□□□□ 0.61
COL5A1P20908 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms