Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.22■□□□□ 0.83
COL9A1P20849 MIR3197-201ENST00000582241 73 ntBASIC20.22■□□□□ 0.83
COL9A1P20849 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
COL9A1P20849 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.22■□□□□ 0.83
COL9A1P20849 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC20.22■□□□□ 0.83
COL9A1P20849 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL9A1P20849 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.22■□□□□ 0.83
COL9A1P20849 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL9A1P20849 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL9A1P20849 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.22■□□□□ 0.83
COL9A1P20849 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
COL9A1P20849 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL9A1P20849 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
COL9A1P20849 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL9A1P20849 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
COL9A1P20849 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL9A1P20849 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL9A1P20849 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL9A1P20849 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL9A1P20849 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
COL9A1P20849 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL9A1P20849 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL9A1P20849 AL121603.2-201ENST00000557373 2117 ntBASIC20.21■□□□□ 0.83
COL9A1P20849 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL9A1P20849 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.21■□□□□ 0.83
COL9A1P20849 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL9A1P20849 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
COL9A1P20849 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL9A1P20849 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL9A1P20849 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL9A1P20849 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL9A1P20849 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
COL9A1P20849 MIR564-202ENST00000385049 94 ntBASIC20.2■□□□□ 0.82
COL9A1P20849 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC20.2■□□□□ 0.82
COL9A1P20849 HTR5BP-201ENST00000430851 1154 ntBASIC20.2■□□□□ 0.82
COL9A1P20849 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC20.2■□□□□ 0.82
COL9A1P20849 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL9A1P20849 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.2■□□□□ 0.82
COL9A1P20849 AL441883.1-201ENST00000566170 1045 ntBASIC20.2■□□□□ 0.82
COL9A1P20849 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
COL9A1P20849 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC20.2■□□□□ 0.82
COL9A1P20849 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
COL9A1P20849 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL9A1P20849 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL9A1P20849 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL9A1P20849 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL9A1P20849 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
COL9A1P20849 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL9A1P20849 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
COL9A1P20849 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL9A1P20849 FEM1AP4-201ENST00000443167 1987 ntBASIC20.19■□□□□ 0.82
COL9A1P20849 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL9A1P20849 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC20.19■□□□□ 0.82
COL9A1P20849 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL9A1P20849 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL9A1P20849 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
COL9A1P20849 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL9A1P20849 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL9A1P20849 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL9A1P20849 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.19■□□□□ 0.82
COL9A1P20849 AP002469.2-201ENST00000531724 424 ntBASIC20.19■□□□□ 0.82
COL9A1P20849 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC20.19■□□□□ 0.82
COL9A1P20849 AC239800.4-201ENST00000603712 296 ntBASIC20.19■□□□□ 0.82
COL9A1P20849 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.19■□□□□ 0.82
COL9A1P20849 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.19■□□□□ 0.82
COL9A1P20849 AC012676.1-201ENST00000574705 1949 ntBASIC20.19■□□□□ 0.82
COL9A1P20849 PLK5-205ENST00000642079 1969 ntBASIC20.19■□□□□ 0.82
COL9A1P20849 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL9A1P20849 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.19■□□□□ 0.82
COL9A1P20849 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL9A1P20849 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL9A1P20849 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.19■□□□□ 0.82
COL9A1P20849 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.18■□□□□ 0.82
COL9A1P20849 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL9A1P20849 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.18■□□□□ 0.82
COL9A1P20849 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL9A1P20849 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
COL9A1P20849 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL9A1P20849 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL9A1P20849 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.18■□□□□ 0.82
COL9A1P20849 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.18■□□□□ 0.82
COL9A1P20849 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC20.18■□□□□ 0.82
COL9A1P20849 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC20.18■□□□□ 0.82
COL9A1P20849 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL9A1P20849 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.18■□□□□ 0.82
COL9A1P20849 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL9A1P20849 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC20.18■□□□□ 0.82
COL9A1P20849 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL9A1P20849 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL9A1P20849 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.18■□□□□ 0.82
COL9A1P20849 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL9A1P20849 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.18■□□□□ 0.82
COL9A1P20849 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL9A1P20849 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL9A1P20849 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.18■□□□□ 0.82
COL9A1P20849 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
COL9A1P20849 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.17■□□□□ 0.82
COL9A1P20849 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL9A1P20849 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL9A1P20849 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms