Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL1P09341 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC15.17■□□□□ 0.02
CXCL1P09341 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL1P09341 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL1P09341 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
CXCL1P09341 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC15.17■□□□□ 0.02
CXCL1P09341 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CXCL1P09341 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC15.17■□□□□ 0.02
CXCL1P09341 CD276-201ENST00000318424 2738 ntTSL 5 BASIC15.17■□□□□ 0.02
CXCL1P09341 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC15.17■□□□□ 0.02
CXCL1P09341 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC15.17■□□□□ 0.02
CXCL1P09341 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC15.17■□□□□ 0.02
CXCL1P09341 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC15.17■□□□□ 0.02
CXCL1P09341 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL1P09341 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL1P09341 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC15.17■□□□□ 0.02
CXCL1P09341 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL1P09341 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL1P09341 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC15.17■□□□□ 0.02
CXCL1P09341 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL1P09341 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC15.17■□□□□ 0.02
CXCL1P09341 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CXCL1P09341 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL1P09341 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL1P09341 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
CXCL1P09341 AC141586.5-201ENST00000624546 2050 ntBASIC15.16■□□□□ 0.02
CXCL1P09341 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL1P09341 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL1P09341 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL1P09341 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC15.16■□□□□ 0.02
CXCL1P09341 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
CXCL1P09341 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL1P09341 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL1P09341 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC15.16■□□□□ 0.02
CXCL1P09341 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC15.16■□□□□ 0.02
CXCL1P09341 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL1P09341 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC15.16■□□□□ 0.02
CXCL1P09341 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL1P09341 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL1P09341 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL1P09341 BX842568.3-201ENST00000418104 571 ntBASIC15.16■□□□□ 0.02
CXCL1P09341 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL1P09341 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC15.16■□□□□ 0.02
CXCL1P09341 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC15.16■□□□□ 0.02
CXCL1P09341 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
CXCL1P09341 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CXCL1P09341 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC15.16■□□□□ 0.02
CXCL1P09341 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL1P09341 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC15.16■□□□□ 0.02
CXCL1P09341 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL1P09341 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC15.16■□□□□ 0.02
CXCL1P09341 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL1P09341 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL1P09341 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL1P09341 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC15.16■□□□□ 0.02
CXCL1P09341 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC15.16■□□□□ 0.02
CXCL1P09341 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL1P09341 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL1P09341 AC084018.2-201ENST00000613093 2607 ntBASIC15.15■□□□□ 0.02
CXCL1P09341 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC15.15■□□□□ 0.02
CXCL1P09341 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL1P09341 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL1P09341 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC15.15■□□□□ 0.02
CXCL1P09341 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CXCL1P09341 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
CXCL1P09341 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC15.15■□□□□ 0.02
CXCL1P09341 GRAMD4P7-201ENST00000578182 1232 ntBASIC15.15■□□□□ 0.02
CXCL1P09341 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL1P09341 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL1P09341 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
CXCL1P09341 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL1P09341 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL1P09341 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
CXCL1P09341 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL1P09341 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC15.15■□□□□ 0.02
CXCL1P09341 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL1P09341 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL1P09341 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC15.14■□□□□ 0.01
CXCL1P09341 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
CXCL1P09341 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL1P09341 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC15.14■□□□□ 0.01
CXCL1P09341 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL1P09341 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL1P09341 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL1P09341 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC15.14■□□□□ 0.01
CXCL1P09341 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL1P09341 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC15.14■□□□□ 0.01
CXCL1P09341 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL1P09341 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL1P09341 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL1P09341 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL1P09341 GUSBP5-201ENST00000418136 578 ntBASIC15.14■□□□□ 0.01
CXCL1P09341 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL1P09341 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC15.14■□□□□ 0.01
CXCL1P09341 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC15.14■□□□□ 0.01
CXCL1P09341 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC15.14■□□□□ 0.01
CXCL1P09341 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL1P09341 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL1P09341 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.14■□□□□ 0.01
CXCL1P09341 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms