Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC15.97■□□□□ 0.15
TRAV40A0A0B4J280 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRAV40A0A0B4J280 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRAV40A0A0B4J280 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC15.97■□□□□ 0.15
TRAV40A0A0B4J280 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRAV40A0A0B4J280 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRAV40A0A0B4J280 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC15.97■□□□□ 0.15
TRAV40A0A0B4J280 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
TRAV40A0A0B4J280 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRAV40A0A0B4J280 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRAV40A0A0B4J280 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRAV40A0A0B4J280 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
TRAV40A0A0B4J280 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC15.96■□□□□ 0.15
TRAV40A0A0B4J280 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRAV40A0A0B4J280 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRAV40A0A0B4J280 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRAV40A0A0B4J280 DET1-207ENST00000564406 2315 ntTSL 2 BASIC15.96■□□□□ 0.15
TRAV40A0A0B4J280 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRAV40A0A0B4J280 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
TRAV40A0A0B4J280 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRAV40A0A0B4J280 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC15.96■□□□□ 0.15
TRAV40A0A0B4J280 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TRAV40A0A0B4J280 KRT18P21-201ENST00000515767 1272 ntBASIC15.96■□□□□ 0.15
TRAV40A0A0B4J280 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC15.96■□□□□ 0.15
TRAV40A0A0B4J280 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC15.96■□□□□ 0.15
TRAV40A0A0B4J280 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC15.96■□□□□ 0.15
TRAV40A0A0B4J280 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC15.96■□□□□ 0.15
TRAV40A0A0B4J280 AL031985.4-201ENST00000642138 673 ntBASIC15.96■□□□□ 0.15
TRAV40A0A0B4J280 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TRAV40A0A0B4J280 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
TRAV40A0A0B4J280 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRAV40A0A0B4J280 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
TRAV40A0A0B4J280 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
TRAV40A0A0B4J280 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
TRAV40A0A0B4J280 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
TRAV40A0A0B4J280 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
TRAV40A0A0B4J280 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
TRAV40A0A0B4J280 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV40A0A0B4J280 MOK-225ENST00000522867 1883 ntTSL 5 BASIC15.95■□□□□ 0.14
TRAV40A0A0B4J280 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC15.95■□□□□ 0.14
TRAV40A0A0B4J280 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV40A0A0B4J280 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV40A0A0B4J280 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC15.95■□□□□ 0.14
TRAV40A0A0B4J280 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV40A0A0B4J280 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV40A0A0B4J280 MIR1238-201ENST00000408483 83 ntBASIC15.95■□□□□ 0.14
TRAV40A0A0B4J280 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC15.95■□□□□ 0.14
TRAV40A0A0B4J280 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC15.95■□□□□ 0.14
TRAV40A0A0B4J280 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC15.95■□□□□ 0.14
TRAV40A0A0B4J280 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV40A0A0B4J280 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV40A0A0B4J280 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC15.95■□□□□ 0.14
TRAV40A0A0B4J280 AC079598.2-202ENST00000546624 1451 ntBASIC15.95■□□□□ 0.14
TRAV40A0A0B4J280 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC15.95■□□□□ 0.14
TRAV40A0A0B4J280 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV40A0A0B4J280 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV40A0A0B4J280 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV40A0A0B4J280 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV40A0A0B4J280 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV40A0A0B4J280 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 AL390955.1-201ENST00000428694 934 ntBASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 FAM210CP-201ENST00000445714 574 ntBASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 AL445675.2-201ENST00000620291 557 ntBASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC15.94■□□□□ 0.14
TRAV40A0A0B4J280 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 CD37-204ENST00000535669 1674 ntTSL 2 BASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 AC026271.3-201ENST00000571884 352 ntBASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms