Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AP001858.2-201ENST00000536213 601 ntBASIC4.83□□□□□ -1.64
CDX1P47902 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC4.83□□□□□ -1.64
CDX1P47902 AP002373.2-201ENST00000541631 1060 ntBASIC4.83□□□□□ -1.64
CDX1P47902 AL121579.2-201ENST00000555466 590 ntBASIC4.83□□□□□ -1.64
CDX1P47902 NDUFA5P11-201ENST00000567995 343 ntBASIC4.83□□□□□ -1.64
CDX1P47902 DPRXP4-201ENST00000578053 568 ntBASIC4.83□□□□□ -1.64
CDX1P47902 AC027334.1-201ENST00000603257 310 ntBASIC4.83□□□□□ -1.64
CDX1P47902 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC4.83□□□□□ -1.64
CDX1P47902 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC4.83□□□□□ -1.64
CDX1P47902 MIR6071-201ENST00000616741 78 ntBASIC4.83□□□□□ -1.64
CDX1P47902 MIR6778-201ENST00000617912 73 ntBASIC4.83□□□□□ -1.64
CDX1P47902 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.83□□□□□ -1.64
CDX1P47902 OXSM-209ENST00000626005 309 ntTSL 3 BASIC4.83□□□□□ -1.64
CDX1P47902 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CDX1P47902 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.83□□□□□ -1.64
CDX1P47902 AC079298.1-201ENST00000625026 1619 ntBASIC4.83□□□□□ -1.64
CDX1P47902 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CDX1P47902 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CDX1P47902 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CDX1P47902 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CDX1P47902 PCAT14-202ENST00000627127 3935 ntBASIC4.82□□□□□ -1.64
CDX1P47902 AC093225.1-201ENST00000506867 1408 ntBASIC4.82□□□□□ -1.64
CDX1P47902 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.82□□□□□ -1.64
CDX1P47902 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CDX1P47902 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CDX1P47902 CASC19-248ENST00000641674 1356 ntBASIC4.82□□□□□ -1.64
CDX1P47902 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
CDX1P47902 UQCRC2P1-201ENST00000417777 1332 ntBASIC4.82□□□□□ -1.64
CDX1P47902 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC4.82□□□□□ -1.64
CDX1P47902 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC4.82□□□□□ -1.64
CDX1P47902 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.82□□□□□ -1.64
CDX1P47902 RAD1P1-201ENST00000231383 813 ntBASIC4.82□□□□□ -1.64
CDX1P47902 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CDX1P47902 NAP1L4P1-201ENST00000319092 1157 ntBASIC4.82□□□□□ -1.64
CDX1P47902 RNFT1P3-201ENST00000340898 1052 ntBASIC4.82□□□□□ -1.64
CDX1P47902 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC4.82□□□□□ -1.64
CDX1P47902 SNORA21-201ENST00000362423 132 ntBASIC4.82□□□□□ -1.64
CDX1P47902 U3.7-201ENST00000363668 216 ntBASIC4.82□□□□□ -1.64
CDX1P47902 RNU1-146P-201ENST00000364015 165 ntBASIC4.82□□□□□ -1.64
CDX1P47902 RNA5SP156-201ENST00000410250 110 ntBASIC4.82□□□□□ -1.64
CDX1P47902 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC4.82□□□□□ -1.64
CDX1P47902 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC4.82□□□□□ -1.64
CDX1P47902 AC023141.6-201ENST00000429418 337 ntBASIC4.82□□□□□ -1.64
CDX1P47902 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC4.82□□□□□ -1.64
CDX1P47902 RPL17P35-201ENST00000432217 549 ntBASIC4.82□□□□□ -1.64
CDX1P47902 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC4.82□□□□□ -1.64
CDX1P47902 AMYP1-201ENST00000440059 1023 ntBASIC4.82□□□□□ -1.64
CDX1P47902 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC4.82□□□□□ -1.64
CDX1P47902 PPIAP7-201ENST00000454070 489 ntBASIC4.82□□□□□ -1.64
CDX1P47902 AC112187.1-201ENST00000455837 479 ntBASIC4.82□□□□□ -1.64
CDX1P47902 MTND2P30-201ENST00000456663 382 ntBASIC4.82□□□□□ -1.64
CDX1P47902 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC4.82□□□□□ -1.64
CDX1P47902 AC020779.1-201ENST00000478757 796 ntBASIC4.82□□□□□ -1.64
CDX1P47902 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC4.82□□□□□ -1.64
CDX1P47902 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC4.82□□□□□ -1.64
CDX1P47902 LSM3P4-201ENST00000502948 309 ntBASIC4.82□□□□□ -1.64
CDX1P47902 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC4.82□□□□□ -1.64
CDX1P47902 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CDX1P47902 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC4.82□□□□□ -1.64
CDX1P47902 RNA5SP400-201ENST00000517155 111 ntBASIC4.82□□□□□ -1.64
CDX1P47902 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC4.82□□□□□ -1.64
CDX1P47902 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC4.82□□□□□ -1.64
CDX1P47902 AP000620.1-201ENST00000527147 504 ntBASIC4.82□□□□□ -1.64
CDX1P47902 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC4.82□□□□□ -1.64
CDX1P47902 AC004923.2-201ENST00000529649 369 ntBASIC4.82□□□□□ -1.64
CDX1P47902 CASP5-209ENST00000531367 879 ntTSL 5 BASIC4.82□□□□□ -1.64
CDX1P47902 HMGB1P42-201ENST00000532126 553 ntBASIC4.82□□□□□ -1.64
CDX1P47902 AC134349.2-201ENST00000535136 910 ntBASIC4.82□□□□□ -1.64
CDX1P47902 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC4.82□□□□□ -1.64
CDX1P47902 C1GALT1P1-201ENST00000548895 1089 ntBASIC4.82□□□□□ -1.64
CDX1P47902 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CDX1P47902 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC4.82□□□□□ -1.64
CDX1P47902 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC4.82□□□□□ -1.64
CDX1P47902 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC4.82□□□□□ -1.64
CDX1P47902 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC4.82□□□□□ -1.64
CDX1P47902 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC4.82□□□□□ -1.64
CDX1P47902 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC4.82□□□□□ -1.64
CDX1P47902 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC4.82□□□□□ -1.64
CDX1P47902 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC4.82□□□□□ -1.64
CDX1P47902 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC4.82□□□□□ -1.64
CDX1P47902 AC092266.1-201ENST00000610958 165 ntBASIC4.82□□□□□ -1.64
CDX1P47902 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
CDX1P47902 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CDX1P47902 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CDX1P47902 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CDX1P47902 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CDX1P47902 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC4.82□□□□□ -1.64
CDX1P47902 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC4.82□□□□□ -1.64
CDX1P47902 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CDX1P47902 ZNF733P-202ENST00000444809 1573 ntBASIC4.82□□□□□ -1.64
CDX1P47902 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CDX1P47902 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
CDX1P47902 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
CDX1P47902 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CDX1P47902 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CDX1P47902 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC4.81□□□□□ -1.64
CDX1P47902 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CDX1P47902 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CDX1P47902 AC093591.2-201ENST00000565254 3843 ntBASIC4.81□□□□□ -1.64
CDX1P47902 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms