RNA–Protein interactions for RNA: ENST00000340898.6

RNFT1P3-201, Transcript of ring finger protein, transmembrane 1 pseudogene 3, humanhuman

BASIC

Gene RNFT1P3, Length 1,052 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1P3-201ENST00000340898 AEBP2Q6ZN18 517 aaPredicted RBP21.69■■□□□ 1.06
RNFT1P3-201ENST00000340898 CHIC1Q5VXU3 224 aa21.56■■□□□ 1.04
RNFT1P3-201ENST00000340898 PHF23Q9BUL5 403 aaPredicted RBP18.93■□□□□ 0.62
RNFT1P3-201ENST00000340898 SENP3Q9H4L4 574 aaPredicted RBP18.48■□□□□ 0.55
RNFT1P3-201ENST00000340898 PLPPR3Q6T4P5 718 aa17.71■□□□□ 0.43
RNFT1P3-201ENST00000340898 FOXD1Q16676 465 aa17.04■□□□□ 0.32
RNFT1P3-201ENST00000340898 ADRA2BP18089 450 aa16.65■□□□□ 0.26
RNFT1P3-201ENST00000340898 PPP6R1Q9UPN7 881 aa16.61■□□□□ 0.25
RNFT1P3-201ENST00000340898 PIAS4Q8N2W9 510 aaPredicted RBP16.19■□□□□ 0.18
RNFT1P3-201ENST00000340898 MSH5O43196 834 aa15.68■□□□□ 0.1
RNFT1P3-201ENST00000340898 PPP4R3CPQ6ZMV5 832 aa15.62■□□□□ 0.09
RNFT1P3-201ENST00000340898 POTEDQ86YR6 584 aa15.56■□□□□ 0.08
RNFT1P3-201ENST00000340898 KCNA4P22459 653 aa15.54■□□□□ 0.08
RNFT1P3-201ENST00000340898 NCBP3Q53F19 620 aaKnown RBP15.39■□□□□ 0.05
RNFT1P3-201ENST00000340898 SCAF1Q9H7N4 1312 aaKnown RBP15.39■□□□□ 0.05
RNFT1P3-201ENST00000340898 EHMT2Q96KQ7 1210 aa15.16■□□□□ 0.02
RNFT1P3-201ENST00000340898 CNKSR2Q8WXI2 1034 aa15.14■□□□□ 0.01
RNFT1P3-201ENST00000340898 NPM3O75607 178 aaKnown RBP15.03■□□□□ -0
RNFT1P3-201ENST00000340898 MAPK8IP2Q13387 824 aaPredicted RBP15□□□□□ -0.01
RNFT1P3-201ENST00000340898 SLC4A1APQ9BWU0 796 aaKnown RBP14.93□□□□□ -0.02
RNFT1P3-201ENST00000340898 NISCHQ9Y2I1 1504 aa14.86□□□□□ -0.03
RNFT1P3-201ENST00000340898 DMRT2Q9Y5R5 561 aa14.76□□□□□ -0.05
RNFT1P3-201ENST00000340898 RNF216Q9NWF9 866 aaPredicted RBP14.75□□□□□ -0.05
RNFT1P3-201ENST00000340898 CSRNP3Q8WYN3 585 aa14.7□□□□□ -0.06
RNFT1P3-201ENST00000340898 HOXD11P31277 338 aaPredicted RBP14.58□□□□□ -0.08
RNFT1P3-201ENST00000340898 DNAJC5BQ9UF47 199 aa14.56□□□□□ -0.08
RNFT1P3-201ENST00000340898 ZBTB22O15209 634 aa14.27□□□□□ -0.13
RNFT1P3-201ENST00000340898 FOXD4L1Q9NU39 408 aa14.27□□□□□ -0.13
RNFT1P3-201ENST00000340898 DCAF8L1A6NGE4 600 aa14.18□□□□□ -0.14
RNFT1P3-201ENST00000340898 SLC4A2P04920 1241 aa14.08□□□□□ -0.16
RNFT1P3-201ENST00000340898 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.97□□□□□ -0.17
RNFT1P3-201ENST00000340898 MYCNP04198 464 aaPredicted RBP13.94□□□□□ -0.18
RNFT1P3-201ENST00000340898 ATXN8OSP0DMR3 200 aa13.79□□□□□ -0.2
RNFT1P3-201ENST00000340898 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.76□□□□□ -0.21
RNFT1P3-201ENST00000340898 HNRNPUL2Q1KMD3 747 aaKnown RBP13.76□□□□□ -0.21
RNFT1P3-201ENST00000340898 SAMD1Q6SPF0 538 aaPredicted RBP13.69□□□□□ -0.22
RNFT1P3-201ENST00000340898 U3KPZ7 1027 aaPredicted RBP13.67□□□□□ -0.22
RNFT1P3-201ENST00000340898 APLP2Q06481 763 aa13.57□□□□□ -0.24
RNFT1P3-201ENST00000340898 CACNB1Q02641 598 aaPredicted RBP13.54□□□□□ -0.24
RNFT1P3-201ENST00000340898 ATF5Q9Y2D1 282 aaPredicted RBP13.44□□□□□ -0.26
RNFT1P3-201ENST00000340898 RNF39Q9H2S5 420 aa13.4□□□□□ -0.26
RNFT1P3-201ENST00000340898 C1QBPQ07021 282 aaKnown RBP13.33□□□□□ -0.28
RNFT1P3-201ENST00000340898 ZNF219Q9P2Y4 722 aaPredicted RBP13.29□□□□□ -0.28
RNFT1P3-201ENST00000340898 FKBP8Q14318 412 aa13.27□□□□□ -0.29
RNFT1P3-201ENST00000340898 CAPN15O75808 1086 aa13.22□□□□□ -0.29
RNFT1P3-201ENST00000340898 TRHP20396 242 aaPredicted RBP13.22□□□□□ -0.29
RNFT1P3-201ENST00000340898 SPINK5Q9NQ38 1064 aaPredicted RBP13.2□□□□□ -0.3
RNFT1P3-201ENST00000340898 CCDC180Q9P1Z9 1646 aa13.17□□□□□ -0.3
RNFT1P3-201ENST00000340898 AMER1Q5JTC6 1135 aaPredicted RBP13.17□□□□□ -0.3
RNFT1P3-201ENST00000340898 RTN4Q9NQC3 1192 aaKnown RBP13.1□□□□□ -0.31
RNFT1P3-201ENST00000340898 ABCC9O60706 1549 aa13.09□□□□□ -0.31
RNFT1P3-201ENST00000340898 POLA2Q14181 598 aa13.07□□□□□ -0.32
RNFT1P3-201ENST00000340898 FBLN2P98095 1184 aa13.02□□□□□ -0.33
RNFT1P3-201ENST00000340898 ABCB7O75027 752 aa12.94□□□□□ -0.34
RNFT1P3-201ENST00000340898 ZBTB12Q9Y330 459 aaPredicted RBP12.94□□□□□ -0.34
RNFT1P3-201ENST00000340898 MKRN4PQ13434 485 aaPredicted RBP12.87□□□□□ -0.35
RNFT1P3-201ENST00000340898 DSG3P32926 999 aa12.86□□□□□ -0.35
RNFT1P3-201ENST00000340898 SPDYE4A6NLX3 237 aa12.84□□□□□ -0.35
RNFT1P3-201ENST00000340898 SLC24A1O60721 1099 aa12.83□□□□□ -0.36
RNFT1P3-201ENST00000340898 FBXO3Q9UK99 471 aa12.7□□□□□ -0.38
RNFT1P3-201ENST00000340898 ZNF692Q9BU19 519 aaPredicted RBP12.59□□□□□ -0.39
RNFT1P3-201ENST00000340898 SPDYE2BA6NHP3 402 aa12.58□□□□□ -0.4
RNFT1P3-201ENST00000340898 SPDYE6P0CI01 402 aa12.58□□□□□ -0.4
RNFT1P3-201ENST00000340898 SPDYE2Q495Y8 402 aa12.58□□□□□ -0.4
RNFT1P3-201ENST00000340898 PROM2Q8N271 834 aa12.58□□□□□ -0.4
RNFT1P3-201ENST00000340898 OSCARQ8IYS5 282 aa12.56□□□□□ -0.4
RNFT1P3-201ENST00000340898 DCAF8L2P0C7V8 631 aa12.52□□□□□ -0.41
RNFT1P3-201ENST00000340898 RB1CC1Q8TDY2 1594 aa12.47□□□□□ -0.41
RNFT1P3-201ENST00000340898 VASPP50552 380 aaPredicted RBP12.46□□□□□ -0.41
RNFT1P3-201ENST00000340898 SSUH2Q9Y2M2 353 aa12.45□□□□□ -0.42
RNFT1P3-201ENST00000340898 NACADO15069 1562 aa12.43□□□□□ -0.42
RNFT1P3-201ENST00000340898 PABPN1Q86U42 306 aaKnown RBP eCLIP12.4□□□□□ -0.42
RNFT1P3-201ENST00000340898 STAG3Q9UJ98 1225 aa12.36□□□□□ -0.43
RNFT1P3-201ENST00000340898 RBM42Q9BTD8 480 aaKnown RBP12.35□□□□□ -0.43
RNFT1P3-201ENST00000340898 ZCCHC6Q5VYS8 1495 aaKnown RBP12.34□□□□□ -0.43
RNFT1P3-201ENST00000340898 IFNLR1Q8IU57 520 aaPredicted RBP12.31□□□□□ -0.44
RNFT1P3-201ENST00000340898 MYO15BQ96JP2 1530 aa12.31□□□□□ -0.44
RNFT1P3-201ENST00000340898 UNC13AQ9UPW8 1703 aa12.26□□□□□ -0.45
RNFT1P3-201ENST00000340898 DCAF1Q9Y4B6 1507 aa12.23□□□□□ -0.45
RNFT1P3-201ENST00000340898 AKT1S1Q96B36 256 aa12.23□□□□□ -0.45
RNFT1P3-201ENST00000340898 PLCD3Q8N3E9 789 aa12.21□□□□□ -0.45
RNFT1P3-201ENST00000340898 KLHL34Q8N239 644 aa12.2□□□□□ -0.46
RNFT1P3-201ENST00000340898 MIER1Q8N108 512 aa12.19□□□□□ -0.46
RNFT1P3-201ENST00000340898 BICRAQ9NZM4 1560 aa12.18□□□□□ -0.46
RNFT1P3-201ENST00000340898 PLEKHG5O94827 1062 aa12.18□□□□□ -0.46
RNFT1P3-201ENST00000340898 POTEHQ6S545 545 aa12.17□□□□□ -0.46
RNFT1P3-201ENST00000340898 SPDYE1Q8NFV5 336 aaPredicted RBP12.15□□□□□ -0.46
RNFT1P3-201ENST00000340898 PLCB2Q00722 1185 aa12.13□□□□□ -0.47
RNFT1P3-201ENST00000340898 PKD2Q13563 968 aa12.12□□□□□ -0.47
RNFT1P3-201ENST00000340898 SPOCK2Q92563 424 aa12.12□□□□□ -0.47
RNFT1P3-201ENST00000340898 ZBTB47Q9UFB7 747 aaPredicted RBP12.09□□□□□ -0.47
RNFT1P3-201ENST00000340898 SCRIBQ14160 1630 aa12.08□□□□□ -0.48
RNFT1P3-201ENST00000340898 REM2Q8IYK8 340 aaPredicted RBP12.08□□□□□ -0.48
RNFT1P3-201ENST00000340898 CLEC11AQ9Y240 323 aa12.07□□□□□ -0.48
RNFT1P3-201ENST00000340898 PRR29P0C7W0 189 aa12.03□□□□□ -0.48
RNFT1P3-201ENST00000340898 ECM2O94769 699 aaPredicted RBP11.99□□□□□ -0.49
RNFT1P3-201ENST00000340898 HAP1P54257 671 aaPredicted RBP11.97□□□□□ -0.49
RNFT1P3-201ENST00000340898 PITPNM1O00562 1244 aa11.9□□□□□ -0.5
RNFT1P3-201ENST00000340898 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.9□□□□□ -0.5
RNFT1P3-201ENST00000340898 SHROOM4Q9ULL8 1493 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms