RNA–Protein interactions for RNA: ENST00000606785.1

LINC00397-202, long intergenic non-protein coding RNA 397, humanhuman

TSL 5 BASIC

Gene LINC00397, Length 409 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00397-202ENST00000606785 AEBP2Q6ZN18 517 aaPredicted RBP23.92■■□□□ 1.42
LINC00397-202ENST00000606785 CHIC1Q5VXU3 224 aa22.43■■□□□ 1.18
LINC00397-202ENST00000606785 SENP3Q9H4L4 574 aaPredicted RBP20.55■□□□□ 0.88
LINC00397-202ENST00000606785 PHF23Q9BUL5 403 aaPredicted RBP20.17■□□□□ 0.82
LINC00397-202ENST00000606785 FOXD1Q16676 465 aa19.16■□□□□ 0.66
LINC00397-202ENST00000606785 POTEDQ86YR6 584 aa18.41■□□□□ 0.54
LINC00397-202ENST00000606785 MSH5O43196 834 aa18.16■□□□□ 0.5
LINC00397-202ENST00000606785 PIAS4Q8N2W9 510 aaPredicted RBP17.8■□□□□ 0.44
LINC00397-202ENST00000606785 PLPPR3Q6T4P5 718 aa17.67■□□□□ 0.42
LINC00397-202ENST00000606785 PPP6R1Q9UPN7 881 aa17.53■□□□□ 0.4
LINC00397-202ENST00000606785 ADRA2BP18089 450 aa17.45■□□□□ 0.38
LINC00397-202ENST00000606785 DMRT2Q9Y5R5 561 aa16.22■□□□□ 0.19
LINC00397-202ENST00000606785 MAPK8IP2Q13387 824 aaPredicted RBP16.14■□□□□ 0.17
LINC00397-202ENST00000606785 SCAF1Q9H7N4 1312 aaKnown RBP16.06■□□□□ 0.16
LINC00397-202ENST00000606785 CACNB1Q02641 598 aaPredicted RBP15.8■□□□□ 0.12
LINC00397-202ENST00000606785 DCAF8L1A6NGE4 600 aa15.51■□□□□ 0.07
LINC00397-202ENST00000606785 HOXD11P31277 338 aaPredicted RBP15.46■□□□□ 0.07
LINC00397-202ENST00000606785 RNF39Q9H2S5 420 aa15.43■□□□□ 0.06
LINC00397-202ENST00000606785 PPP4R3CPQ6ZMV5 832 aa15.4■□□□□ 0.06
LINC00397-202ENST00000606785 CNKSR2Q8WXI2 1034 aa15.24■□□□□ 0.03
LINC00397-202ENST00000606785 RNF216Q9NWF9 866 aaPredicted RBP15.23■□□□□ 0.03
LINC00397-202ENST00000606785 C1QBPQ07021 282 aaKnown RBP15.2■□□□□ 0.02
LINC00397-202ENST00000606785 DNAJC5BQ9UF47 199 aa15.08■□□□□ 0
LINC00397-202ENST00000606785 KCNA4P22459 653 aa14.82□□□□□ -0.04
LINC00397-202ENST00000606785 NCBP3Q53F19 620 aaKnown RBP14.72□□□□□ -0.05
LINC00397-202ENST00000606785 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.69□□□□□ -0.06
LINC00397-202ENST00000606785 EHMT2Q96KQ7 1210 aa14.59□□□□□ -0.07
LINC00397-202ENST00000606785 NPM3O75607 178 aaKnown RBP14.46□□□□□ -0.09
LINC00397-202ENST00000606785 POTEHQ6S545 545 aa14.35□□□□□ -0.11
LINC00397-202ENST00000606785 U3KPZ7 1027 aaPredicted RBP14.34□□□□□ -0.11
LINC00397-202ENST00000606785 DSG3P32926 999 aa14.28□□□□□ -0.12
LINC00397-202ENST00000606785 CAPN15O75808 1086 aa14.25□□□□□ -0.13
LINC00397-202ENST00000606785 SLC4A1APQ9BWU0 796 aaKnown RBP14.24□□□□□ -0.13
LINC00397-202ENST00000606785 SPINK5Q9NQ38 1064 aaPredicted RBP14.23□□□□□ -0.13
LINC00397-202ENST00000606785 CSRNP3Q8WYN3 585 aa14.13□□□□□ -0.15
LINC00397-202ENST00000606785 APLP2Q06481 763 aa13.97□□□□□ -0.17
LINC00397-202ENST00000606785 ZNF219Q9P2Y4 722 aaPredicted RBP13.93□□□□□ -0.18
LINC00397-202ENST00000606785 SLC4A2P04920 1241 aa13.92□□□□□ -0.18
LINC00397-202ENST00000606785 TRHP20396 242 aaPredicted RBP13.89□□□□□ -0.19
LINC00397-202ENST00000606785 ABCB7O75027 752 aa13.86□□□□□ -0.19
LINC00397-202ENST00000606785 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.84□□□□□ -0.19
LINC00397-202ENST00000606785 HNRNPUL2Q1KMD3 747 aaKnown RBP13.84□□□□□ -0.19
LINC00397-202ENST00000606785 SAMD1Q6SPF0 538 aaPredicted RBP13.72□□□□□ -0.21
LINC00397-202ENST00000606785 RBM42Q9BTD8 480 aaKnown RBP13.69□□□□□ -0.22
LINC00397-202ENST00000606785 ZBTB22O15209 634 aa13.66□□□□□ -0.22
LINC00397-202ENST00000606785 CHRDL2Q6WN34 429 aa13.52□□□□□ -0.25
LINC00397-202ENST00000606785 FOXD4L1Q9NU39 408 aa13.46□□□□□ -0.25
LINC00397-202ENST00000606785 POLA2Q14181 598 aa13.43□□□□□ -0.26
LINC00397-202ENST00000606785 MYCNP04198 464 aaPredicted RBP13.42□□□□□ -0.26
LINC00397-202ENST00000606785 AKT1S1Q96B36 256 aa13.27□□□□□ -0.29
LINC00397-202ENST00000606785 SP7Q8TDD2 431 aaPredicted RBP13.26□□□□□ -0.29
LINC00397-202ENST00000606785 ZBTB12Q9Y330 459 aaPredicted RBP13.21□□□□□ -0.29
LINC00397-202ENST00000606785 REM2Q8IYK8 340 aaPredicted RBP13.11□□□□□ -0.31
LINC00397-202ENST00000606785 PIP4P2Q8N4L2 257 aa13.1□□□□□ -0.31
LINC00397-202ENST00000606785 ATF5Q9Y2D1 282 aaPredicted RBP13.07□□□□□ -0.32
LINC00397-202ENST00000606785 OSCARQ8IYS5 282 aa13.03□□□□□ -0.32
LINC00397-202ENST00000606785 PITPNM1O00562 1244 aa12.98□□□□□ -0.33
LINC00397-202ENST00000606785 FXR2P51116 673 aaKnown RBP eCLIP12.97□□□□□ -0.33
LINC00397-202ENST00000606785 HAX1O00165 279 aa12.96□□□□□ -0.33
LINC00397-202ENST00000606785 ATXN8OSP0DMR3 200 aa12.95□□□□□ -0.34
LINC00397-202ENST00000606785 AMER1Q5JTC6 1135 aaPredicted RBP12.8□□□□□ -0.36
LINC00397-202ENST00000606785 RTN4Q9NQC3 1192 aaKnown RBP12.77□□□□□ -0.37
LINC00397-202ENST00000606785 SPDYE2BA6NHP3 402 aa12.74□□□□□ -0.37
LINC00397-202ENST00000606785 SPDYE6P0CI01 402 aa12.74□□□□□ -0.37
LINC00397-202ENST00000606785 SPDYE2Q495Y8 402 aa12.74□□□□□ -0.37
LINC00397-202ENST00000606785 EVX2Q03828 476 aa12.73□□□□□ -0.37
LINC00397-202ENST00000606785 FKBP8Q14318 412 aa12.73□□□□□ -0.37
LINC00397-202ENST00000606785 FBLN2P98095 1184 aa12.67□□□□□ -0.38
LINC00397-202ENST00000606785 SLC24A1O60721 1099 aa12.65□□□□□ -0.38
LINC00397-202ENST00000606785 PRKAR2AP13861 404 aaKnown RBP12.63□□□□□ -0.39
LINC00397-202ENST00000606785 SPDYE1Q8NFV5 336 aaPredicted RBP12.62□□□□□ -0.39
LINC00397-202ENST00000606785 C19orf67A6NJJ6 358 aa12.57□□□□□ -0.4
LINC00397-202ENST00000606785 CLEC11AQ9Y240 323 aa12.56□□□□□ -0.4
LINC00397-202ENST00000606785 SSUH2Q9Y2M2 353 aa12.51□□□□□ -0.41
LINC00397-202ENST00000606785 MKRN4PQ13434 485 aaPredicted RBP12.47□□□□□ -0.41
LINC00397-202ENST00000606785 ZNF692Q9BU19 519 aaPredicted RBP12.47□□□□□ -0.41
LINC00397-202ENST00000606785 GABBR2O75899 941 aa12.46□□□□□ -0.41
LINC00397-202ENST00000606785 LHX8Q68G74 356 aa12.41□□□□□ -0.42
LINC00397-202ENST00000606785 CHADLQ6NUI6 762 aa12.35□□□□□ -0.43
LINC00397-202ENST00000606785 PRR29P0C7W0 189 aa12.32□□□□□ -0.44
LINC00397-202ENST00000606785 PABPN1Q86U42 306 aaKnown RBP eCLIP12.27□□□□□ -0.45
LINC00397-202ENST00000606785 CLCN6P51797 869 aa12.22□□□□□ -0.45
LINC00397-202ENST00000606785 CD44P16070 742 aaKnown RBP12.21□□□□□ -0.45
LINC00397-202ENST00000606785 POTEIP0CG38 1075 aa12.18□□□□□ -0.46
LINC00397-202ENST00000606785 FARP1Q9Y4F1 1045 aaPredicted RBP12.17□□□□□ -0.46
LINC00397-202ENST00000606785 FBXO3Q9UK99 471 aa12.11□□□□□ -0.47
LINC00397-202ENST00000606785 SPDYE4A6NLX3 237 aa12.08□□□□□ -0.48
LINC00397-202ENST00000606785 DCBLD2Q96PD2 775 aa12.05□□□□□ -0.48
LINC00397-202ENST00000606785 ZNF579Q8NAF0 562 aaKnown RBP12.04□□□□□ -0.48
LINC00397-202ENST00000606785 PROM2Q8N271 834 aa12□□□□□ -0.49
LINC00397-202ENST00000606785 ZRANB1Q9UGI0 708 aa11.96□□□□□ -0.49
LINC00397-202ENST00000606785 PLSCR2Q9NRY7 297 aa11.94□□□□□ -0.5
LINC00397-202ENST00000606785 VASPP50552 380 aaPredicted RBP11.92□□□□□ -0.5
LINC00397-202ENST00000606785 CREBZFQ9NS37 354 aa11.91□□□□□ -0.5
LINC00397-202ENST00000606785 STAG3Q9UJ98 1225 aa11.9□□□□□ -0.5
LINC00397-202ENST00000606785 GALR2O43603 387 aaPredicted RBP11.86□□□□□ -0.51
LINC00397-202ENST00000606785 OTUD5Q96G74 571 aa11.83□□□□□ -0.52
LINC00397-202ENST00000606785 PAK3O75914 559 aaPredicted RBP11.81□□□□□ -0.52
LINC00397-202ENST00000606785 IFNLR1Q8IU57 520 aaPredicted RBP11.8□□□□□ -0.52
LINC00397-202ENST00000606785 PLCB2Q00722 1185 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms