RNA–Protein interactions for RNA: ENST00000532126.1

HMGB1P42-201, Transcript of high mobility group box 1 pseudogene 42, humanhuman

BASIC

Gene HMGB1P42, Length 553 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P42-201ENST00000532126 CHIC1Q5VXU3 224 aa15.17■□□□□ 0.02
HMGB1P42-201ENST00000532126 AEBP2Q6ZN18 517 aaPredicted RBP14.9□□□□□ -0.02
HMGB1P42-201ENST00000532126 NISCHQ9Y2I1 1504 aa13.85□□□□□ -0.19
HMGB1P42-201ENST00000532126 PHF23Q9BUL5 403 aaPredicted RBP13.39□□□□□ -0.27
HMGB1P42-201ENST00000532126 PLPPR3Q6T4P5 718 aa12.61□□□□□ -0.39
HMGB1P42-201ENST00000532126 SENP3Q9H4L4 574 aaPredicted RBP12.57□□□□□ -0.4
HMGB1P42-201ENST00000532126 CCDC180Q9P1Z9 1646 aa12.28□□□□□ -0.44
HMGB1P42-201ENST00000532126 ABCC9O60706 1549 aa12.07□□□□□ -0.48
HMGB1P42-201ENST00000532126 ADRA2BP18089 450 aa11.77□□□□□ -0.53
HMGB1P42-201ENST00000532126 EHMT2Q96KQ7 1210 aa11.68□□□□□ -0.54
HMGB1P42-201ENST00000532126 DCAF8L2P0C7V8 631 aa11.65□□□□□ -0.54
HMGB1P42-201ENST00000532126 KCNA4P22459 653 aa11.62□□□□□ -0.55
HMGB1P42-201ENST00000532126 PPP6R1Q9UPN7 881 aa11.62□□□□□ -0.55
HMGB1P42-201ENST00000532126 RB1CC1Q8TDY2 1594 aa11.59□□□□□ -0.55
HMGB1P42-201ENST00000532126 FOXD1Q16676 465 aa11.58□□□□□ -0.56
HMGB1P42-201ENST00000532126 NACADO15069 1562 aa11.58□□□□□ -0.56
HMGB1P42-201ENST00000532126 ZCCHC6Q5VYS8 1495 aaKnown RBP11.53□□□□□ -0.56
HMGB1P42-201ENST00000532126 MYO15BQ96JP2 1530 aa11.5□□□□□ -0.57
HMGB1P42-201ENST00000532126 DCAF1Q9Y4B6 1507 aa11.45□□□□□ -0.58
HMGB1P42-201ENST00000532126 SLC24A1O60721 1099 aa11.35□□□□□ -0.59
HMGB1P42-201ENST00000532126 PABPN1Q86U42 306 aaKnown RBP eCLIP11.31□□□□□ -0.6
HMGB1P42-201ENST00000532126 UNC13AQ9UPW8 1703 aa11.24□□□□□ -0.61
HMGB1P42-201ENST00000532126 SCRIBQ14160 1630 aa11.24□□□□□ -0.61
HMGB1P42-201ENST00000532126 BICRAQ9NZM4 1560 aa11.21□□□□□ -0.61
HMGB1P42-201ENST00000532126 SLC4A1APQ9BWU0 796 aaKnown RBP11.2□□□□□ -0.62
HMGB1P42-201ENST00000532126 PPP4R3CPQ6ZMV5 832 aa11.19□□□□□ -0.62
HMGB1P42-201ENST00000532126 CSRNP3Q8WYN3 585 aa11.14□□□□□ -0.63
HMGB1P42-201ENST00000532126 SHROOM4Q9ULL8 1493 aa11.12□□□□□ -0.63
HMGB1P42-201ENST00000532126 NCBP3Q53F19 620 aaKnown RBP11.1□□□□□ -0.63
HMGB1P42-201ENST00000532126 PIAS4Q8N2W9 510 aaPredicted RBP11.1□□□□□ -0.63
HMGB1P42-201ENST00000532126 DNAJC5BQ9UF47 199 aa11.09□□□□□ -0.63
HMGB1P42-201ENST00000532126 EIF4G1Q04637 1599 aaKnown RBP10.94□□□□□ -0.66
HMGB1P42-201ENST00000532126 NPM3O75607 178 aaKnown RBP10.9□□□□□ -0.66
HMGB1P42-201ENST00000532126 CC2D2AQ9P2K1 1620 aa10.89□□□□□ -0.67
HMGB1P42-201ENST00000532126 AMER1Q5JTC6 1135 aaPredicted RBP10.88□□□□□ -0.67
HMGB1P42-201ENST00000532126 CECR2Q9BXF3 1484 aa10.85□□□□□ -0.67
HMGB1P42-201ENST00000532126 RTN4Q9NQC3 1192 aaKnown RBP10.75□□□□□ -0.69
HMGB1P42-201ENST00000532126 BAZ1AQ9NRL2 1556 aaPredicted RBP10.74□□□□□ -0.69
HMGB1P42-201ENST00000532126 CNKSR2Q8WXI2 1034 aa10.74□□□□□ -0.69
HMGB1P42-201ENST00000532126 SMARCA4P51532 1647 aa10.73□□□□□ -0.69
HMGB1P42-201ENST00000532126 NCAPD3P42695 1498 aa10.7□□□□□ -0.7
HMGB1P42-201ENST00000532126 ATAD2BQ9ULI0 1458 aa10.7□□□□□ -0.7
HMGB1P42-201ENST00000532126 SCAF1Q9H7N4 1312 aaKnown RBP10.7□□□□□ -0.7
HMGB1P42-201ENST00000532126 SMARCA2P51531 1590 aa10.68□□□□□ -0.7
HMGB1P42-201ENST00000532126 MROH2BQ7Z745 1585 aa10.68□□□□□ -0.7
HMGB1P42-201ENST00000532126 ZBTB22O15209 634 aa10.67□□□□□ -0.7
HMGB1P42-201ENST00000532126 MSH5O43196 834 aa10.65□□□□□ -0.7
HMGB1P42-201ENST00000532126 BAZ1BQ9UIG0 1483 aaKnown RBP10.62□□□□□ -0.71
HMGB1P42-201ENST00000532126 PEG3Q9GZU2 1588 aa10.62□□□□□ -0.71
HMGB1P42-201ENST00000532126 HMGXB3Q12766 1538 aa10.62□□□□□ -0.71
HMGB1P42-201ENST00000532126 RSF1Q96T23 1441 aaPredicted RBP10.57□□□□□ -0.72
HMGB1P42-201ENST00000532126 WIZO95785 1651 aa10.53□□□□□ -0.72
HMGB1P42-201ENST00000532126 FOXD4L1Q9NU39 408 aa10.52□□□□□ -0.73
HMGB1P42-201ENST00000532126 TOP2AP11388 1531 aaKnown RBP10.44□□□□□ -0.74
HMGB1P42-201ENST00000532126 NESP48681 1621 aa10.44□□□□□ -0.74
HMGB1P42-201ENST00000532126 ERCC6Q03468 1493 aa10.42□□□□□ -0.74
HMGB1P42-201ENST00000532126 CADPSQ9ULU8 1353 aa10.4□□□□□ -0.74
HMGB1P42-201ENST00000532126 MAPK8IP2Q13387 824 aaPredicted RBP10.4□□□□□ -0.74
HMGB1P42-201ENST00000532126 LAMC3Q9Y6N6 1575 aa10.39□□□□□ -0.75
HMGB1P42-201ENST00000532126 RNF216Q9NWF9 866 aaPredicted RBP10.37□□□□□ -0.75
HMGB1P42-201ENST00000532126 PDS5BQ9NTI5 1447 aa10.36□□□□□ -0.75
HMGB1P42-201ENST00000532126 POTEDQ86YR6 584 aa10.35□□□□□ -0.75
HMGB1P42-201ENST00000532126 SUPT5HO00267 1087 aaKnown RBP10.34□□□□□ -0.75
HMGB1P42-201ENST00000532126 CCDC88BA6NC98 1476 aa10.34□□□□□ -0.75
HMGB1P42-201ENST00000532126 CFTRP13569 1480 aa10.32□□□□□ -0.76
HMGB1P42-201ENST00000532126 CUX2O14529 1486 aa10.29□□□□□ -0.76
HMGB1P42-201ENST00000532126 FANCD2Q9BXW9 1451 aa10.27□□□□□ -0.77
HMGB1P42-201ENST00000532126 KIF21AQ7Z4S6 1674 aa10.26□□□□□ -0.77
HMGB1P42-201ENST00000532126 CEP164Q9UPV0 1460 aa10.25□□□□□ -0.77
HMGB1P42-201ENST00000532126 MRC2Q9UBG0 1479 aa10.24□□□□□ -0.77
HMGB1P42-201ENST00000532126 THOC2Q8NI27 1593 aaKnown RBP10.24□□□□□ -0.77
HMGB1P42-201ENST00000532126 WDR62O43379 1518 aa10.19□□□□□ -0.78
HMGB1P42-201ENST00000532126 PRDM2Q13029 1718 aa10.16□□□□□ -0.78
HMGB1P42-201ENST00000532126 HOXD11P31277 338 aaPredicted RBP10.15□□□□□ -0.78
HMGB1P42-201ENST00000532126 URB2Q14146 1524 aaKnown RBP10.15□□□□□ -0.78
HMGB1P42-201ENST00000532126 SLC4A2P04920 1241 aa10.13□□□□□ -0.79
HMGB1P42-201ENST00000532126 DMRT2Q9Y5R5 561 aa10.12□□□□□ -0.79
HMGB1P42-201ENST00000532126 ABCC8Q09428 1581 aa10.11□□□□□ -0.79
HMGB1P42-201ENST00000532126 ATXN8OSP0DMR3 200 aa10.1□□□□□ -0.79
HMGB1P42-201ENST00000532126 TOPBP1Q92547 1522 aa10.1□□□□□ -0.79
HMGB1P42-201ENST00000532126 DNMBPQ6XZF7 1577 aa10.07□□□□□ -0.8
HMGB1P42-201ENST00000532126 MYCNP04198 464 aaPredicted RBP10.07□□□□□ -0.8
HMGB1P42-201ENST00000532126 FKBP8Q14318 412 aa10.06□□□□□ -0.8
HMGB1P42-201ENST00000532126 IFT140Q96RY7 1462 aa10.05□□□□□ -0.8
HMGB1P42-201ENST00000532126 DNAJC5Q9H3Z4 198 aa10.01□□□□□ -0.81
HMGB1P42-201ENST00000532126 POLA1P09884 1462 aaPredicted RBP10.01□□□□□ -0.81
HMGB1P42-201ENST00000532126 CUX1P39880 1505 aa10.01□□□□□ -0.81
HMGB1P42-201ENST00000532126 SOGA1O94964 1423 aa9.99□□□□□ -0.81
HMGB1P42-201ENST00000532126 FGD5Q6ZNL6 1462 aa9.99□□□□□ -0.81
HMGB1P42-201ENST00000532126 ZNF608Q9ULD9 1512 aaPredicted RBP9.99□□□□□ -0.81
HMGB1P42-201ENST00000532126 WRNQ14191 1432 aaPredicted RBP eCLIP9.98□□□□□ -0.81
HMGB1P42-201ENST00000532126 RAD54L2Q9Y4B4 1467 aa9.98□□□□□ -0.81
HMGB1P42-201ENST00000532126 BCANQ96GW7 911 aa9.96□□□□□ -0.82
HMGB1P42-201ENST00000532126 TARBP1Q13395 1621 aaKnown RBP9.96□□□□□ -0.82
HMGB1P42-201ENST00000532126 TDRD9Q8NDG6 1382 aaKnown RBP9.95□□□□□ -0.82
HMGB1P42-201ENST00000532126 AQRO60306 1485 aaKnown RBP eCLIP9.95□□□□□ -0.82
HMGB1P42-201ENST00000532126 EIF4G3O43432 1585 aaKnown RBP9.93□□□□□ -0.82
HMGB1P42-201ENST00000532126 PLCB2Q00722 1185 aa9.92□□□□□ -0.82
HMGB1P42-201ENST00000532126 TOP2BQ02880 1626 aa9.92□□□□□ -0.82
HMGB1P42-201ENST00000532126 SYNJ1O43426 1573 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 150.1 ms