Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
SSX2IPQ9Y2D8 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SSX2IPQ9Y2D8 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
SSX2IPQ9Y2D8 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
SSX2IPQ9Y2D8 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SSX2IPQ9Y2D8 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SSX2IPQ9Y2D8 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC21.08■□□□□ 0.97
SSX2IPQ9Y2D8 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.08■□□□□ 0.97
SSX2IPQ9Y2D8 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SSX2IPQ9Y2D8 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC21.08■□□□□ 0.97
SSX2IPQ9Y2D8 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
SSX2IPQ9Y2D8 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SSX2IPQ9Y2D8 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC21.08■□□□□ 0.97
SSX2IPQ9Y2D8 MIR1238-201ENST00000408483 83 ntBASIC21.08■□□□□ 0.97
SSX2IPQ9Y2D8 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.08■□□□□ 0.97
SSX2IPQ9Y2D8 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SSX2IPQ9Y2D8 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC21.08■□□□□ 0.97
SSX2IPQ9Y2D8 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC21.08■□□□□ 0.97
SSX2IPQ9Y2D8 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
SSX2IPQ9Y2D8 NAPSB-206ENST00000562112 1266 ntBASIC21.08■□□□□ 0.97
SSX2IPQ9Y2D8 AP000525.1-201ENST00000608286 694 ntBASIC21.08■□□□□ 0.97
SSX2IPQ9Y2D8 MIR6786-201ENST00000616843 113 ntBASIC21.08■□□□□ 0.97
SSX2IPQ9Y2D8 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC21.08■□□□□ 0.97
SSX2IPQ9Y2D8 AC092865.7-201ENST00000641832 219 ntBASIC21.08■□□□□ 0.97
SSX2IPQ9Y2D8 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SSX2IPQ9Y2D8 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
SSX2IPQ9Y2D8 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SSX2IPQ9Y2D8 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SSX2IPQ9Y2D8 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
SSX2IPQ9Y2D8 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SSX2IPQ9Y2D8 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SSX2IPQ9Y2D8 FEM1AP4-201ENST00000443167 1987 ntBASIC21.07■□□□□ 0.96
SSX2IPQ9Y2D8 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SSX2IPQ9Y2D8 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SSX2IPQ9Y2D8 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SSX2IPQ9Y2D8 FITM1-202ENST00000559294 800 ntBASIC21.07■□□□□ 0.96
SSX2IPQ9Y2D8 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SSX2IPQ9Y2D8 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SSX2IPQ9Y2D8 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC21.07■□□□□ 0.96
SSX2IPQ9Y2D8 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SSX2IPQ9Y2D8 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC21.07■□□□□ 0.96
SSX2IPQ9Y2D8 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SSX2IPQ9Y2D8 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SSX2IPQ9Y2D8 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
SSX2IPQ9Y2D8 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SSX2IPQ9Y2D8 PLK5-205ENST00000642079 1969 ntBASIC21.06■□□□□ 0.96
SSX2IPQ9Y2D8 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
SSX2IPQ9Y2D8 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SSX2IPQ9Y2D8 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
SSX2IPQ9Y2D8 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SSX2IPQ9Y2D8 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SSX2IPQ9Y2D8 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SSX2IPQ9Y2D8 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SSX2IPQ9Y2D8 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
SSX2IPQ9Y2D8 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC21.06■□□□□ 0.96
SSX2IPQ9Y2D8 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SSX2IPQ9Y2D8 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC21.06■□□□□ 0.96
SSX2IPQ9Y2D8 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SSX2IPQ9Y2D8 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.06■□□□□ 0.96
SSX2IPQ9Y2D8 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.06■□□□□ 0.96
SSX2IPQ9Y2D8 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SSX2IPQ9Y2D8 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SSX2IPQ9Y2D8 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC21.06■□□□□ 0.96
SSX2IPQ9Y2D8 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.06■□□□□ 0.96
SSX2IPQ9Y2D8 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SSX2IPQ9Y2D8 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SSX2IPQ9Y2D8 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SSX2IPQ9Y2D8 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 KRT18P22-201ENST00000402024 1347 ntBASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 AC026271.3-201ENST00000571884 352 ntBASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 GRAMD4P8-201ENST00000605465 1115 ntBASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 LINC01568-207ENST00000641790 1380 ntBASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC21.05■□□□□ 0.96
SSX2IPQ9Y2D8 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms