Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 UPK3BP1-201ENST00000428678 509 ntBASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 NME3-204ENST00000563498 920 ntTSL 2 BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 STAC-204ENST00000457375 1366 ntTSL 2 BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 SLC25A3P1-201ENST00000443844 931 ntBASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 TERF1P1-201ENST00000311003 1181 ntBASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 PNN-205ENST00000556530 601 ntTSL 2 BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 AC005363.2-201ENST00000618631 242 ntBASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NOTCH3Q9UM47 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 AL445675.2-201ENST00000620291 557 ntBASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 AC023632.3-201ENST00000521633 145 ntBASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC15.11■□□□□ 0.01
NOTCH3Q9UM47 UNC93B2-201ENST00000285383 730 ntBASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 TMA16-209ENST00000513272 803 ntTSL 2 BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 AC005229.4-201ENST00000610085 2198 ntBASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 ECEL1P1-201ENST00000373592 1742 ntBASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 NIFKP9-201ENST00000419265 221 ntBASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms