Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.78■□□□□ 0.92
CDH9Q9ULB4 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH9Q9ULB4 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.78■□□□□ 0.92
CDH9Q9ULB4 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CDH9Q9ULB4 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH9Q9ULB4 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CDH9Q9ULB4 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH9Q9ULB4 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH9Q9ULB4 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH9Q9ULB4 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH9Q9ULB4 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CDH9Q9ULB4 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH9Q9ULB4 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH9Q9ULB4 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
CDH9Q9ULB4 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CDH9Q9ULB4 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH9Q9ULB4 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.77■□□□□ 0.92
CDH9Q9ULB4 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH9Q9ULB4 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH9Q9ULB4 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CDH9Q9ULB4 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
CDH9Q9ULB4 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
CDH9Q9ULB4 AC026471.5-201ENST00000615068 467 ntBASIC20.77■□□□□ 0.92
CDH9Q9ULB4 CR392000.1-201ENST00000624770 1228 ntBASIC20.77■□□□□ 0.92
CDH9Q9ULB4 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CDH9Q9ULB4 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.77■□□□□ 0.92
CDH9Q9ULB4 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CDH9Q9ULB4 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CDH9Q9ULB4 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CDH9Q9ULB4 KRT16P1-201ENST00000399124 1418 ntBASIC20.77■□□□□ 0.91
CDH9Q9ULB4 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CDH9Q9ULB4 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CDH9Q9ULB4 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.77■□□□□ 0.91
CDH9Q9ULB4 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CDH9Q9ULB4 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 AL445675.2-201ENST00000620291 557 ntBASIC20.76■□□□□ 0.91
CDH9Q9ULB4 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH9Q9ULB4 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 AL355355.2-201ENST00000442321 338 ntBASIC20.75■□□□□ 0.91
CDH9Q9ULB4 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDH9Q9ULB4 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms