Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC21.17■□□□□ 0.98
CNTN3Q9P232 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CNTN3Q9P232 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC21.17■□□□□ 0.98
CNTN3Q9P232 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC21.17■□□□□ 0.98
CNTN3Q9P232 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC21.17■□□□□ 0.98
CNTN3Q9P232 KRT16P1-201ENST00000399124 1418 ntBASIC21.17■□□□□ 0.98
CNTN3Q9P232 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC21.17■□□□□ 0.98
CNTN3Q9P232 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CNTN3Q9P232 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CNTN3Q9P232 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CNTN3Q9P232 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CNTN3Q9P232 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CNTN3Q9P232 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CNTN3Q9P232 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CNTN3Q9P232 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.16■□□□□ 0.98
CNTN3Q9P232 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CNTN3Q9P232 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC21.16■□□□□ 0.98
CNTN3Q9P232 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC21.16■□□□□ 0.98
CNTN3Q9P232 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CNTN3Q9P232 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CNTN3Q9P232 AL355355.2-201ENST00000442321 338 ntBASIC21.16■□□□□ 0.98
CNTN3Q9P232 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CNTN3Q9P232 NUDT16P1-203ENST00000513809 620 ntBASIC21.16■□□□□ 0.98
CNTN3Q9P232 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC21.16■□□□□ 0.98
CNTN3Q9P232 AL355075.4-201ENST00000554988 638 ntBASIC21.16■□□□□ 0.98
CNTN3Q9P232 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC21.16■□□□□ 0.98
CNTN3Q9P232 CR392000.1-201ENST00000624770 1228 ntBASIC21.16■□□□□ 0.98
CNTN3Q9P232 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.16■□□□□ 0.98
CNTN3Q9P232 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CNTN3Q9P232 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CNTN3Q9P232 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CNTN3Q9P232 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.16■□□□□ 0.98
CNTN3Q9P232 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CNTN3Q9P232 TCF3P1-201ENST00000423021 1937 ntBASIC21.16■□□□□ 0.98
CNTN3Q9P232 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CNTN3Q9P232 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CNTN3Q9P232 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CNTN3Q9P232 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CNTN3Q9P232 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CNTN3Q9P232 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CNTN3Q9P232 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
CNTN3Q9P232 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CNTN3Q9P232 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC21.15■□□□□ 0.98
CNTN3Q9P232 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.15■□□□□ 0.98
CNTN3Q9P232 TSPY15P-201ENST00000457163 923 ntBASIC21.15■□□□□ 0.98
CNTN3Q9P232 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
CNTN3Q9P232 BX088651.1-201ENST00000540551 451 ntBASIC21.15■□□□□ 0.98
CNTN3Q9P232 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.15■□□□□ 0.98
CNTN3Q9P232 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.15■□□□□ 0.98
CNTN3Q9P232 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.15■□□□□ 0.98
CNTN3Q9P232 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC21.15■□□□□ 0.98
CNTN3Q9P232 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CNTN3Q9P232 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CNTN3Q9P232 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CNTN3Q9P232 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
CNTN3Q9P232 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CNTN3Q9P232 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.14■□□□□ 0.98
CNTN3Q9P232 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CNTN3Q9P232 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CNTN3Q9P232 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.98
CNTN3Q9P232 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC21.14■□□□□ 0.98
CNTN3Q9P232 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CNTN3Q9P232 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CNTN3Q9P232 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC21.14■□□□□ 0.97
CNTN3Q9P232 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
CNTN3Q9P232 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.14■□□□□ 0.97
CNTN3Q9P232 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CNTN3Q9P232 AC073912.3-201ENST00000624414 853 ntBASIC21.14■□□□□ 0.97
CNTN3Q9P232 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC21.14■□□□□ 0.97
CNTN3Q9P232 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CNTN3Q9P232 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC21.14■□□□□ 0.97
CNTN3Q9P232 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.14■□□□□ 0.97
CNTN3Q9P232 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CNTN3Q9P232 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CNTN3Q9P232 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CNTN3Q9P232 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
CNTN3Q9P232 KRT8P8-201ENST00000434750 1448 ntBASIC21.13■□□□□ 0.97
CNTN3Q9P232 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
CNTN3Q9P232 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CNTN3Q9P232 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CNTN3Q9P232 PPP1R14BP5-201ENST00000440334 435 ntBASIC21.13■□□□□ 0.97
CNTN3Q9P232 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC21.13■□□□□ 0.97
CNTN3Q9P232 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC21.13■□□□□ 0.97
CNTN3Q9P232 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC21.13■□□□□ 0.97
CNTN3Q9P232 DECR2-212ENST00000627716 352 ntTSL 2 BASIC21.13■□□□□ 0.97
CNTN3Q9P232 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CNTN3Q9P232 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.13■□□□□ 0.97
CNTN3Q9P232 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CNTN3Q9P232 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CNTN3Q9P232 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
CNTN3Q9P232 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.12■□□□□ 0.97
CNTN3Q9P232 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CNTN3Q9P232 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CNTN3Q9P232 AC116562.2-201ENST00000507042 360 ntBASIC21.12■□□□□ 0.97
CNTN3Q9P232 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
CNTN3Q9P232 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC21.12■□□□□ 0.97
CNTN3Q9P232 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC21.12■□□□□ 0.97
CNTN3Q9P232 REXO1L10P-201ENST00000615707 1290 ntBASIC21.12■□□□□ 0.97
CNTN3Q9P232 REXO1L12P-201ENST00000622156 912 ntBASIC21.12■□□□□ 0.97
CNTN3Q9P232 HLA-A-209ENST00000638375 975 ntBASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms