Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC25■■□□□ 1.59
USP42Q9H9J4 HMGA1P5-201ENST00000412453 271 ntBASIC25■■□□□ 1.59
USP42Q9H9J4 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC25■■□□□ 1.59
USP42Q9H9J4 AC091390.4-202ENST00000476426 537 ntBASIC25■■□□□ 1.59
USP42Q9H9J4 LINC01238-205ENST00000567549 1107 ntBASIC25■■□□□ 1.59
USP42Q9H9J4 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC25■■□□□ 1.59
USP42Q9H9J4 AP000692.2-201ENST00000608391 879 ntBASIC25■■□□□ 1.59
USP42Q9H9J4 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
USP42Q9H9J4 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC25■■□□□ 1.59
USP42Q9H9J4 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
USP42Q9H9J4 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC25■■□□□ 1.59
USP42Q9H9J4 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
USP42Q9H9J4 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
USP42Q9H9J4 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC24.99■■□□□ 1.59
USP42Q9H9J4 AL138966.2-201ENST00000621997 464 ntBASIC24.99■■□□□ 1.59
USP42Q9H9J4 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
USP42Q9H9J4 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
USP42Q9H9J4 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC24.99■■□□□ 1.59
USP42Q9H9J4 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
USP42Q9H9J4 AC073314.1-201ENST00000568729 2216 ntBASIC24.98■■□□□ 1.59
USP42Q9H9J4 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
USP42Q9H9J4 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
USP42Q9H9J4 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
USP42Q9H9J4 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC24.98■■□□□ 1.59
USP42Q9H9J4 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
USP42Q9H9J4 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC24.98■■□□□ 1.59
USP42Q9H9J4 RCC2P6-201ENST00000526625 1557 ntBASIC24.98■■□□□ 1.59
USP42Q9H9J4 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC24.98■■□□□ 1.59
USP42Q9H9J4 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC24.98■■□□□ 1.59
USP42Q9H9J4 COPE-203ENST00000351079 907 ntTSL 2 BASIC24.98■■□□□ 1.59
USP42Q9H9J4 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
USP42Q9H9J4 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
USP42Q9H9J4 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC24.98■■□□□ 1.59
USP42Q9H9J4 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
USP42Q9H9J4 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
USP42Q9H9J4 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC24.98■■□□□ 1.59
USP42Q9H9J4 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
USP42Q9H9J4 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC24.98■■□□□ 1.59
USP42Q9H9J4 SLC25A1P4-201ENST00000567977 778 ntBASIC24.98■■□□□ 1.59
USP42Q9H9J4 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC24.98■■□□□ 1.59
USP42Q9H9J4 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC24.98■■□□□ 1.59
USP42Q9H9J4 AC130371.2-201ENST00000619443 611 ntBASIC24.98■■□□□ 1.59
USP42Q9H9J4 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC24.98■■□□□ 1.59
USP42Q9H9J4 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC24.98■■□□□ 1.59
USP42Q9H9J4 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
USP42Q9H9J4 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
USP42Q9H9J4 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
USP42Q9H9J4 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
USP42Q9H9J4 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC24.98■■□□□ 1.59
USP42Q9H9J4 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
USP42Q9H9J4 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC24.98■■□□□ 1.59
USP42Q9H9J4 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
USP42Q9H9J4 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
USP42Q9H9J4 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
USP42Q9H9J4 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
USP42Q9H9J4 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC24.97■■□□□ 1.59
USP42Q9H9J4 AL031133.1-201ENST00000406807 723 ntBASIC24.97■■□□□ 1.59
USP42Q9H9J4 TUBB8P6-201ENST00000436895 1288 ntBASIC24.97■■□□□ 1.59
USP42Q9H9J4 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
USP42Q9H9J4 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC24.97■■□□□ 1.59
USP42Q9H9J4 METTL23-204ENST00000586752 904 ntTSL 2 BASIC24.97■■□□□ 1.59
USP42Q9H9J4 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC24.97■■□□□ 1.59
USP42Q9H9J4 GABARAPL3-202ENST00000624044 1851 ntBASIC24.97■■□□□ 1.59
USP42Q9H9J4 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC24.97■■□□□ 1.59
USP42Q9H9J4 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC24.97■■□□□ 1.59
USP42Q9H9J4 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
USP42Q9H9J4 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
USP42Q9H9J4 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC24.97■■□□□ 1.59
USP42Q9H9J4 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
USP42Q9H9J4 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC24.97■■□□□ 1.59
USP42Q9H9J4 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC24.96■■□□□ 1.59
USP42Q9H9J4 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC24.96■■□□□ 1.59
USP42Q9H9J4 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
USP42Q9H9J4 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
USP42Q9H9J4 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
USP42Q9H9J4 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC24.96■■□□□ 1.59
USP42Q9H9J4 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
USP42Q9H9J4 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
USP42Q9H9J4 SAPCD2P2-201ENST00000431719 1174 ntBASIC24.96■■□□□ 1.59
USP42Q9H9J4 AC008040.2-201ENST00000461049 708 ntBASIC24.96■■□□□ 1.59
USP42Q9H9J4 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC24.96■■□□□ 1.59
USP42Q9H9J4 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC24.96■■□□□ 1.59
USP42Q9H9J4 AC139887.4-201ENST00000607877 719 ntBASIC24.96■■□□□ 1.59
USP42Q9H9J4 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
USP42Q9H9J4 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC24.96■■□□□ 1.59
USP42Q9H9J4 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
USP42Q9H9J4 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC24.95■■□□□ 1.59
USP42Q9H9J4 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
USP42Q9H9J4 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.58
USP42Q9H9J4 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
USP42Q9H9J4 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
USP42Q9H9J4 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
USP42Q9H9J4 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
USP42Q9H9J4 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC24.95■■□□□ 1.58
USP42Q9H9J4 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC24.95■■□□□ 1.58
USP42Q9H9J4 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC24.95■■□□□ 1.58
USP42Q9H9J4 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
USP42Q9H9J4 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.58
USP42Q9H9J4 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC24.95■■□□□ 1.58
USP42Q9H9J4 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms