Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC20.08■□□□□ 0.8
TTC28Q96AY4 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC20.08■□□□□ 0.8
TTC28Q96AY4 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC20.07■□□□□ 0.8
TTC28Q96AY4 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TTC28Q96AY4 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
TTC28Q96AY4 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TTC28Q96AY4 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TTC28Q96AY4 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
TTC28Q96AY4 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC20.07■□□□□ 0.8
TTC28Q96AY4 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.07■□□□□ 0.8
TTC28Q96AY4 REXO1L6P-202ENST00000619970 1078 ntBASIC20.07■□□□□ 0.8
TTC28Q96AY4 AL162741.1-201ENST00000565563 1558 ntBASIC20.07■□□□□ 0.8
TTC28Q96AY4 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
TTC28Q96AY4 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TTC28Q96AY4 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.07■□□□□ 0.8
TTC28Q96AY4 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
TTC28Q96AY4 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TTC28Q96AY4 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
TTC28Q96AY4 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TTC28Q96AY4 AC243591.1-201ENST00000452967 1364 ntBASIC20.06■□□□□ 0.8
TTC28Q96AY4 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TTC28Q96AY4 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TTC28Q96AY4 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TTC28Q96AY4 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TTC28Q96AY4 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TTC28Q96AY4 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC20.06■□□□□ 0.8
TTC28Q96AY4 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC20.06■□□□□ 0.8
TTC28Q96AY4 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC20.06■□□□□ 0.8
TTC28Q96AY4 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.06■□□□□ 0.8
TTC28Q96AY4 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.06■□□□□ 0.8
TTC28Q96AY4 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TTC28Q96AY4 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC20.05■□□□□ 0.8
TTC28Q96AY4 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC20.05■□□□□ 0.8
TTC28Q96AY4 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
TTC28Q96AY4 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC20.05■□□□□ 0.8
TTC28Q96AY4 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
TTC28Q96AY4 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TTC28Q96AY4 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TTC28Q96AY4 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
TTC28Q96AY4 HLA-J-203ENST00000494367 1087 ntBASIC20.05■□□□□ 0.8
TTC28Q96AY4 RNPS1P1-201ENST00000507437 918 ntBASIC20.05■□□□□ 0.8
TTC28Q96AY4 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC20.05■□□□□ 0.8
TTC28Q96AY4 TPM1-218ENST00000559281 851 ntTSL 5 BASIC20.05■□□□□ 0.8
TTC28Q96AY4 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TTC28Q96AY4 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TTC28Q96AY4 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TTC28Q96AY4 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TTC28Q96AY4 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TTC28Q96AY4 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TTC28Q96AY4 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TTC28Q96AY4 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TTC28Q96AY4 MIR940-201ENST00000401276 94 ntBASIC20.04■□□□□ 0.8
TTC28Q96AY4 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC20.04■□□□□ 0.8
TTC28Q96AY4 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC20.04■□□□□ 0.8
TTC28Q96AY4 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TTC28Q96AY4 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TTC28Q96AY4 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.04■□□□□ 0.8
TTC28Q96AY4 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TTC28Q96AY4 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TTC28Q96AY4 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TTC28Q96AY4 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC20.04■□□□□ 0.8
TTC28Q96AY4 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC20.04■□□□□ 0.8
TTC28Q96AY4 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TTC28Q96AY4 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TTC28Q96AY4 PIN1-206ENST00000587625 878 ntTSL 2 BASIC20.03■□□□□ 0.8
TTC28Q96AY4 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.03■□□□□ 0.8
TTC28Q96AY4 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TTC28Q96AY4 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TTC28Q96AY4 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
TTC28Q96AY4 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
TTC28Q96AY4 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC20.03■□□□□ 0.8
TTC28Q96AY4 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC20.03■□□□□ 0.8
TTC28Q96AY4 AC004967.1-201ENST00000453589 447 ntBASIC20.03■□□□□ 0.8
TTC28Q96AY4 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC20.03■□□□□ 0.8
TTC28Q96AY4 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TTC28Q96AY4 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
TTC28Q96AY4 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TTC28Q96AY4 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TTC28Q96AY4 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
TTC28Q96AY4 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TTC28Q96AY4 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TTC28Q96AY4 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.02■□□□□ 0.8
TTC28Q96AY4 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TTC28Q96AY4 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC20.02■□□□□ 0.8
TTC28Q96AY4 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC20.02■□□□□ 0.8
TTC28Q96AY4 AC027601.4-201ENST00000611259 610 ntBASIC20.02■□□□□ 0.8
TTC28Q96AY4 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TTC28Q96AY4 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TTC28Q96AY4 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
TTC28Q96AY4 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.02■□□□□ 0.8
TTC28Q96AY4 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TTC28Q96AY4 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.02■□□□□ 0.8
TTC28Q96AY4 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TTC28Q96AY4 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TTC28Q96AY4 AC098831.1-202ENST00000438821 336 ntBASIC20.02■□□□□ 0.8
TTC28Q96AY4 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC20.02■□□□□ 0.8
TTC28Q96AY4 WDR6-223ENST00000627177 207 ntTSL 2 BASIC20.02■□□□□ 0.8
TTC28Q96AY4 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.02■□□□□ 0.8
TTC28Q96AY4 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.02■□□□□ 0.79
TTC28Q96AY4 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms