Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 AP002365.1-201ENST00000603448 772 ntBASIC12.3□□□□□ -0.44
LINC00643Q86TS7 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 AL596257.1-201ENST00000641463 2694 ntBASIC12.3□□□□□ -0.44
LINC00643Q86TS7 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00643Q86TS7 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 AL592295.1-201ENST00000400984 884 ntBASIC12.28□□□□□ -0.44
LINC00643Q86TS7 AC079089.2-201ENST00000531211 1277 ntBASIC12.28□□□□□ -0.44
LINC00643Q86TS7 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
LINC00643Q86TS7 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
LINC00643Q86TS7 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC12.27□□□□□ -0.44
LINC00643Q86TS7 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
LINC00643Q86TS7 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms